Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

9469948 .. 9470967

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAATAAAGCTTTTGCATACATCATTGCTGTGAGGGACAGATTTCGTGATGAACCTGCAAAATATCGACAGTTTCTAAGCCTCTTGCGTGATCGTCGAGCTCGTAGAATCGATAAAGCTACTTTCTTTGTAGGGCTGGTGGAGCTCATTAAAGATCACTTGGATCTGCTTCTTGGTTTTAATGCCTTACTTCCAGCTAGGTTTCAGATACCCATCACACCAGCTGGATTTCAAAACGTGGTTGGAAGAAGCGTACCACCGGAGACAACTATCGAGGATGCGACTTCATACCTCAACTCTGTGAAGAGAGCATTTCATGATGAACCTGCAAAATATGAGGAACTTCTTAAGCTCTTGAATGATATTGAAGCTCGTAGAGTCGATGCTGCTAGTTTCATTGCAAGTGTGGAAGAACTCATGAAAGATCACCAGACTCTGCTTAATGGTTTCAGTGTCTTCCTTTCAGCTGAAATGAAGTTTATCAGGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCATGTAGCTGACTCTGTTCTTCAGATATTGAGAATGTACAGTGAGGGAAACAAGTCCAAAAGTGAGGCGTTCCAGGAGGTCGTTCCACTTGTTCAGGATCATGAAGATTTAGTCATGGAGCTTATAAAAATTATTTTCAGTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

222

Amino Acids

25.37

Weight (kDa)

6.54

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	20 - 64	2.6e-09	Paired amphipathic helix repeat
PAH	PF02671	110 - 154	7.2e-11	Paired amphipathic helix repeat
PAH	PF02671	177 - 213	1.8e-06	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	2 cut(s)	64, 334
AclWI	GGATC	3 cut(s)	171, 624, 656
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	255, 557
AflII	CTTAAG	2 cut(s)	347, 491
AgsI	TTSAA	3 cut(s)	233, 358, 368
AjnI	CCWGG	1 cut(s)	591
Alw21I	GWGCWC	2 cut(s)	103, 147
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	171, 624, 656
AlwNI	CAGNNNCTG	1 cut(s)	436
ApeKI	GCWGC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	103, 147
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	103, 147
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	221, 506
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	198, 390
BfrI	CTTAAG	2 cut(s)	347, 491
BfuAI	ACCTGC	2 cut(s)	64, 334
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	268, 373
BpiI	GAAGAC	1 cut(s)	448
Bsa29I	ATCGAT	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	259
Bse3DI	GCAATG	2 cut(s)	24, 396
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	593
BseCI	ATCGAT	1 cut(s)	111
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	212
BseMI	GCAATG	2 cut(s)	24, 396
BseXI	GCAGC	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	103, 147
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	103, 147
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
BspDI	ATCGAT	1 cut(s)	111
BspHI	TCATGA	3 cut(s)	316, 417, 619
BspMI	ACCTGC	2 cut(s)	64, 334
BspPI	GGATC	3 cut(s)	171, 624, 656
BspTI	CTTAAG	2 cut(s)	347, 491
BsrDI	GCAATG	2 cut(s)	24, 396
BsrGI	TGTACA	1 cut(s)	555
BssMI	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	72, 560
Bst6I	CTCTTC	1 cut(s)	299
BstAFI	CTTAAG	2 cut(s)	347, 491
BstAUI	TGTACA	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	6 cut(s)	94, 157, 166, 427, 619, 664
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	457, 565, 664
BveI	ACCTGC	2 cut(s)	64, 334
CaiI	CAGNNNCTG	1 cut(s)	436
CciI	TCATGA	3 cut(s)	316, 417, 619
ClaI	ATCGAT	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	254, 556
CviAII	CATG	5 cut(s)	317, 418, 521, 620, 634
CviQI	GTAC	2 cut(s)	254, 556
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	93, 156, 165, 426, 618, 663
DpnII	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Ecl136II	GAGCTC	2 cut(s)	101, 145
Eco24I	GRGCYC	2 cut(s)	103, 147
Eco53kI	GAGCTC	2 cut(s)	101, 145
Eco57I	CTGAAG	1 cut(s)	524
EcoICRI	GAGCTC	2 cut(s)	101, 145
EcoRII	CCWGG	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	103, 147
FaeI	CATG	5 cut(s)	320, 421, 524, 623, 637
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	5 cut(s)	316, 417, 520, 619, 633
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	103, 147
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	2 cut(s)	198, 390
GluI	GCNGC	1 cut(s)	387
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	5 cut(s)	320, 421, 524, 623, 637
HindIII	AAGCTT	2 cut(s)	9, 488
HinfI	GANTC	4 cut(s)	108, 378, 433, 530
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	419
Hpy188I	TCNGA	2 cut(s)	207, 543
Hpy188III	TCNNGA	7 cut(s)	47, 317, 355, 418, 484, 614, 620
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	72, 560
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	17, 59, 329, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	320, 421, 524, 623, 637
Kzo9I	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
LmnI	GCTCC	2 cut(s)	142, 637
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	268, 373
MaeI	CTAG	2 cut(s)	198, 390
MaeII	ACGT	1 cut(s)	237
MalI	GATC	6 cut(s)	93, 156, 165, 426, 618, 663
MboI	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
MboII	GAAGA	6 cut(s)	258, 316, 422, 448, 530, 635
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	103, 147
MluCI	AATT	1 cut(s)	648
MlyI	GAGTC	3 cut(s)	387, 427, 524
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	8 cut(s)	27, 92, 268, 302, 331, 556, 577, 589
MseI	TTAA	5 cut(s)	150, 180, 348, 441, 492
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	224, 467
MspCI	CTTAAG	2 cut(s)	347, 491
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
NlaIII	CATG	5 cut(s)	320, 421, 524, 623, 637
PagI	TCATGA	3 cut(s)	316, 417, 619
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	3 cut(s)	386, 427, 524
PpsI	GAGTC	3 cut(s)	386, 427, 524
PsiI	TTATAA	1 cut(s)	644
Psp124BI	GAGCTC	2 cut(s)	103, 147
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	2 cut(s)	224, 467
RsaI	GTAC	2 cut(s)	255, 557
RsaNI	GTAC	2 cut(s)	254, 556
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	2 cut(s)	103, 147
SaqAI	TTAA	5 cut(s)	150, 180, 348, 441, 492
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	6 cut(s)	91, 154, 163, 424, 616, 661
SchI	GAGTC	3 cut(s)	387, 427, 524
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	103, 147
SfaNI	GCATC	2 cut(s)	268, 373
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	347, 491
SmoI	CTYRAG	2 cut(s)	347, 491
Sse9I	AATT	1 cut(s)	648
SspMI	CTAG	2 cut(s)	198, 390
SstI	GAGCTC	2 cut(s)	103, 147
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	72, 560
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	67, 97, 111, 273, 381
TasI	AATT	1 cut(s)	648
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	5 cut(s)	150, 180, 348, 441, 492
Tru9I	TTAA	5 cut(s)	150, 180, 348, 441, 492
TscAI	CASTG	3 cut(s)	457, 565, 664
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	9 cut(s)	17, 66, 276, 305, 336, 385, 434, 488, 636
TspRI	CASTG	3 cut(s)	457, 565, 664
Vha464I	CTTAAG	2 cut(s)	347, 491
XspI	CTAG	2 cut(s)	198, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.