Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

8573544 .. 8575184

Gene Structure 1641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTGGAAGACGAGTATCACCTGCTCTAACTAAGGATGATGCGCATTCATACATCATTGCTGTGAAGGAAACATTTCATGATGAACCTACGAAATATCAAGAGTTTATCAAGCTCTTGAATGGTGTTTGTGATCATAGAGTCGATAAATATAGTGTCATTGCAAGGGTGGAGGAACTGATGAAAGATCATCAGGATCTTCTTCTTGGTTTCAGTGTCTTCCTTCCACCTGTTTCTGTAGAGGATTTTATAAACAAGCTCAAGACACGGTTTCAGAGCCTTGATACTCATGTAGTGGGGGCAATTCGCGGGTTAATGAAGATGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCAAGAGGAGGTCATTGATGTTCTCTTCTATCATGAAGATTTGATTGAAGACTTTCTCAGATTTTTCACAAAGAACCCTGTATCAACAGCATCACTACTACTACAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

155

Amino Acids

17.92

Weight (kDa)

5.86

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	32 - 75	2.5e-14	Paired amphipathic helix repeat
PAH	PF02671	105 - 141	4.9e-07	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	251, 466
AarI	CACCTGC	1 cut(s)	31
Acc16I	TGCGCA	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	31
AccII	CGCG	1 cut(s)	309
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	121, 404
AluBI	AGCT	2 cut(s)	115, 259
AluI	AGCT	2 cut(s)	115, 259
AlwI	GGATC	1 cut(s)	204
Asp700I	GAANNNNTTC	2 cut(s)	75, 408
AspLEI	GCGC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	12
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BbsI	GAAGAC	3 cut(s)	16, 211, 411
BclI	TGATCA	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	31
BmsI	GCATC	2 cut(s)	31, 455
BpiI	GAAGAC	3 cut(s)	16, 211, 411
BpuEI	CTTGAG	1 cut(s)	245
Bse3DI	GCAATG	2 cut(s)	57, 159
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	2 cut(s)	57, 159
BseMII	CTCAG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	133, 187, 196
BspACI	CCGC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	2 cut(s)	79, 388
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	57, 159
BssMI	GATC	3 cut(s)	133, 187, 196
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	33, 413
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	136, 190, 199
BstMBI	GATC	3 cut(s)	133, 187, 196
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	309
BstV2I	GAAGAC	3 cut(s)	16, 211, 411
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	31
CciI	TCATGA	2 cut(s)	79, 388
CfoI	GCGC	1 cut(s)	46
CviAII	CATG	3 cut(s)	80, 290, 389
CviJI	RGCY	3 cut(s)	115, 259, 279
CviKI_1	RGCY	3 cut(s)	115, 259, 279
DdeI	CTNAG	2 cut(s)	33, 413
DpnI	GATC	3 cut(s)	135, 189, 198
DpnII	GATC	3 cut(s)	133, 187, 196
DraI	TTTAAA	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
FaeI	CATG	3 cut(s)	83, 293, 392
FaiI	YATR	8 cut(s)	52, 81, 138, 153, 251, 291, 390, 466
FatI	CATG	3 cut(s)	79, 289, 388
FauI	CCCGC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	133
FokI	GGATG	1 cut(s)	50
FspAI	RTGCGCAY	1 cut(s)	45
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	83, 293, 392
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	141
HphI	GGTGA	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	276, 416
Hpy188III	TCNNGA	6 cut(s)	80, 101, 118, 194, 262, 389
HpyAV	CCTTC	2 cut(s)	61, 233
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	164, 358
HpyF3I	CTNAG	2 cut(s)	33, 413
Hsp92II	CATG	3 cut(s)	83, 293, 392
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 187, 196
LpnPI	CCDG	4 cut(s)	36, 179, 243, 447
LweI	GCATC	2 cut(s)	31, 455
MalI	GATC	3 cut(s)	135, 189, 198
MboI	GATC	3 cut(s)	133, 187, 196
MboII	GAAGA	8 cut(s)	21, 191, 194, 211, 331, 373, 404, 416
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	2 cut(s)	303, 461
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	166, 235, 325, 346, 355, 358
MroXI	GAANNNNTTC	2 cut(s)	75, 408
MseI	TTAA	2 cut(s)	314, 327
MslI	CAYNNNNRTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	46
MvnI	CGCG	1 cut(s)	309
NdeII	GATC	3 cut(s)	133, 187, 196
NlaIII	CATG	3 cut(s)	83, 293, 392
NsbI	TGCGCA	1 cut(s)	45
PagI	TCATGA	2 cut(s)	79, 388
PaqCI	CACCTGC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	75, 408
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PsiI	TTATAA	2 cut(s)	251, 466
PsuI	RGATCY	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	314, 327
Sau3AI	GATC	3 cut(s)	133, 187, 196
SchI	GAGTC	1 cut(s)	150
SetI	ASST	7 cut(s)	25, 91, 117, 232, 261, 357, 369
SfaNI	GCATC	2 cut(s)	31, 455
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	303, 461
SsiI	CCGC	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	303, 461
Tru1I	TTAA	2 cut(s)	314, 327
Tru9I	TTAA	2 cut(s)	314, 327
TscAI	CASTG	1 cut(s)	220
TspDTI	ATGAA	6 cut(s)	39, 68, 99, 197, 332, 405
TspRI	CASTG	1 cut(s)	220
XmnI	GAANNNNTTC	2 cut(s)	75, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.