Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

9472077 .. 9473149

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTTGGAAAAAGCAAATCACCAGAGTTCAATTTCGAAGATGGGATGGCATACTTCGATGCTGTGAAGGTCGCATTGCAGGATACTGAACCTGAAAAATATCAAGAGTTTGTAAGAATCTTTATTGATTATACTGCTAATAGATTCGGTTTCGAAACTTTGAGTGCAAGCTTGCAGGAACTCCTGAGAGATCACGCGAATCTGTGTCATGGTTCAAATGTCTTACTTCCTTTTAGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAGTTTCACATCAATAAGGTGGTTGGAAGAAGCGTACCACCGGCGGTGGCGGTGCCTACCATGGATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATATGGAAATTACTAAGCTCTTGACTGATCTTAAAGCTCGTAGAATCAATGCCGCTAGTGTCATTGCAAGGATGGAGGAACTCTTGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCCTTTCACCTACAAGGAGGTTTATCACGAAGCTTAAGGCAAGGTTTCTGGGCGATGGTAGTCAAGTAGTTGACTCAGTTCTCCAGATATTGAGAATGCACAGTGAGGGAAACAAGTCCAAAGATGAGGCGTCTCAGGAGGTCCGTGCACTTATTCAGGGTCATGAAGATTTACTCATGGAGCTTTCAGAAATTTTCAGTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

5.42

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	32 - 75	7.7e-08	Paired amphipathic helix repeat
PAH	PF02671	130 - 174	3.6e-11	Paired amphipathic helix repeat
PAH	PF02671	194 - 236	4.3e-08	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	1 cut(s)	197
AciI	CCGC	3 cut(s)	314, 320, 447
AclWI	GGATC	1 cut(s)	713
AcsI	RAATTY	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	647
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	31, 216, 481, 493
AluBI	AGCT	5 cut(s)	171, 412, 431, 550, 700
AluI	AGCT	5 cut(s)	171, 412, 431, 550, 700
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	654
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	708
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	2 cut(s)	12, 516
AsuII	TTCGAA	2 cut(s)	36, 153
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	658
BaeGI	GKGCMC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	667
BccI	CCATC	5 cut(s)	35, 40, 257, 460, 566
BciVI	GTATCC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	2 cut(s)	264, 450
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	1 cut(s)	324
BmsI	GCATC	2 cut(s)	49, 328
BmtI	GCTAGC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	584
Bpu14I	TTCGAA	2 cut(s)	36, 153
BsaHI	GRCGYC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	258, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	310
Bse3DI	GCAATG	2 cut(s)	74, 456
BseDI	CCNNGG	2 cut(s)	258, 330
BseGI	GGATG	4 cut(s)	51, 249, 340, 471
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	74, 456
BseMII	CTCAG	3 cut(s)	176, 606, 665
BseSI	GKGCMC	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	197
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	257
Bsp119I	TTCGAA	2 cut(s)	36, 153
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	190, 421, 484, 718
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	3 cut(s)	314, 320, 447
BspCNI	CTCAG	3 cut(s)	177, 605, 664
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	2 cut(s)	376, 679
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	713
BspT104I	TTCGAA	2 cut(s)	36, 153
BspT107I	GGYRCC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	74, 456
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	258, 330
BssMI	GATC	4 cut(s)	190, 421, 484, 718
BssNI	GRCGYC	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	620
BstACI	GRCGYC	1 cut(s)	647
BstAFI	CTTAAG	1 cut(s)	551
BstBI	TTCGAA	2 cut(s)	36, 153
BstC8I	GCNNGC	3 cut(s)	169, 173, 265
BstDEI	CTNAG	4 cut(s)	185, 408, 592, 651
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	4 cut(s)	51, 249, 340, 471
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	4 cut(s)	193, 424, 487, 721
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	4 cut(s)	190, 421, 484, 718
BstSLI	GKGCMC	1 cut(s)	667
BstUI	CGCG	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	4 cut(s)	51, 249, 340, 471
BtsIMutI	CAGTG	2 cut(s)	625, 721
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	3 cut(s)	169, 173, 265
CciI	TCATGA	2 cut(s)	376, 679
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	658
CseI	GACGC	1 cut(s)	636
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	5 cut(s)	209, 331, 377, 680, 694
CviJI	RGCY	7 cut(s)	171, 248, 263, 412, 431, 550, 700
CviKI_1	RGCY	7 cut(s)	171, 248, 263, 412, 431, 550, 700
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	4 cut(s)	185, 408, 592, 651
DpnI	GATC	4 cut(s)	192, 423, 486, 720
DpnII	GATC	4 cut(s)	190, 421, 484, 718
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	658
Eco88I	CYCGRG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	5 cut(s)	212, 334, 380, 683, 697
FatI	CATG	5 cut(s)	208, 330, 376, 679, 693
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	4 cut(s)	58, 236, 347, 478
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	2 cut(s)	264, 450
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	584
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	636
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	647
Hin1II	CATG	5 cut(s)	212, 334, 380, 683, 697
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	169, 548
HinfI	GANTC	6 cut(s)	117, 144, 199, 438, 493, 590
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	2 cut(s)	12, 516
Hpy166II	GTNNAC	2 cut(s)	589, 665
Hpy188I	TCNGA	1 cut(s)	706
Hpy8I	GTNNAC	2 cut(s)	589, 665
HpyAV	CCTTC	2 cut(s)	61, 358
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4V	TGCA	8 cut(s)	79, 167, 175, 241, 389, 461, 616, 665
HpyF3I	CTNAG	4 cut(s)	185, 408, 592, 651
Hsp92I	GRCGYC	1 cut(s)	647
Hsp92II	CATG	5 cut(s)	212, 334, 380, 683, 697
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	190, 421, 484, 718
LmnI	GCTCC	1 cut(s)	697
LweI	GCATC	2 cut(s)	49, 328
MaeI	CTAG	2 cut(s)	264, 450
MalI	GATC	4 cut(s)	192, 423, 486, 720
MboI	GATC	4 cut(s)	190, 421, 484, 718
MboII	GAAGA	4 cut(s)	50, 309, 508, 695
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	3 cut(s)	31, 402, 708
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	8 cut(s)	253, 264, 362, 463, 528, 616, 637, 649
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	426, 552
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	618
MvnI	CGCG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	190, 421, 484, 718
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	5 cut(s)	212, 334, 380, 683, 697
NlaIV	GGNNCC	1 cut(s)	324
NspV	TTCGAA	2 cut(s)	36, 153
PagI	TCATGA	2 cut(s)	376, 679
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	5 cut(s)	117, 144, 199, 438, 493
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	658
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	426, 552
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	4 cut(s)	190, 421, 484, 718
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	49, 328
SfuI	TTCGAA	2 cut(s)	36, 153
SgrAI	CRCCGGYG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	31, 402, 708
SsiI	CCGC	3 cut(s)	314, 320, 447
SspMI	CTAG	2 cut(s)	264, 450
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	620
TaqI	TCGA	3 cut(s)	36, 57, 153
TasI	AATT	3 cut(s)	31, 402, 708
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	5 cut(s)	117, 144, 199, 438, 493
Tru1I	TTAA	2 cut(s)	426, 552
Tru9I	TTAA	2 cut(s)	426, 552
TscAI	CASTG	2 cut(s)	625, 721
TspDTI	ATGAA	3 cut(s)	365, 396, 696
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	2 cut(s)	625, 721
Vha464I	CTTAAG	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	2 cut(s)	264, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.