Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

26032546 .. 26034420

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG256500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTTCCGGGACTGATTTCGTTTCGAGAAGAAGAGCTTTCAGGGACTTCCAAGATGATCAATAAGACAACAGAAGGAGGTATCCGAAAACTTACCAGAGGTGACTACTTCACATATCTAAAGGCAGTAAGGGACGTACTTGAAGACGAAGAGAAAATCTACCACGACTTCACTCAACTCCTGAAAGACTATAGTACCCAAAGACTTGATCTTGAAAGTGTGATAGATATGGTGAAAATTTTATTTGAAGGGCATCCAGATTTACTAATGGGTTTCAATACCTTCTTGCCAAAGGGATATGAAATCACCATCACACCAGCCACTCCTGATTTCGTATCCGAAGAAGCTCTCACTTTTGTGAAAAGGGTAAAGGCACGATTTCAAGATGAATATCATGTTTATCTATCTTTTATTGAAATCTTAAAAGGTGAAAACAAGTCCAGAATTTTCCCAAAGGTTGCAGCACTTTTCCGAGATCACCCAGACTTGATTGATGAATTCACTCACTTTCTTCCAAGTGAACCTTCCTGTTCTATTGACCTCTCTAACTGTGAGACTTGCACTCCAAGTTACCATGTTTTGCCAGAGGATTACCCGATTCCTGCTGCTACCCGAAGAACATTGCTTGATTCTCAAGTACTGAATGATCGAGTCTGCATCACTCCTTCAGCTGCTTCCTGTTCAAGAGGAATACACAAAAGCCAATGTGAGCAGAGCCTATTTCAGTGTGAAAATGACATGTTCGAACTTGATATGTTGTTAAGTTCTGTGAATTCAACAATAGGGAGTGTGGAACAGCTAATACAGAAGATTGAAAACAATAGTATTAGTGCATCAATTTGTCTTGAAGATCACTTGACGGTTCTCAATCTGAGGTGCATTGAGAGACTGTATGGTAAACAAGGGCTTGAAGTGGTGGACCTGTTGAGGGAAAATGCTGAATTGGCTCTTCCTGTTATATTAGTCCGACTGAAGCAAAAGCAAGAAGAGTGGGAACAATGTCGCTCGGATTTTAGTCAAGTTTGGGCTCAAGTATATGCCAAGAACCTTAACAATCAAGCTAATCATGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

358

Amino Acids

40.96

Weight (kDa)

4.98

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	53 - 96	1.8e-14	Paired amphipathic helix repeat
PAH	PF02671	132 - 171	9.8e-07	Paired amphipathic helix repeat
Sin3_corepress	PF08295	186 - 275	6.6e-21	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	237, 444, 497, 772
AcuI	CTGAAG	2 cut(s)	651, 992
AfaI	GTAC	3 cut(s)	138, 196, 639
AfiI	CCNNNNNNNGG	1 cut(s)	928
AflIII	ACRYGT	1 cut(s)	738
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	37, 347, 671, 799, 1061
AluI	AGCT	5 cut(s)	37, 347, 671, 799, 1061
Alw26I	GTCTC	2 cut(s)	548, 880
ApeKI	GCWGC	3 cut(s)	461, 605, 671
ApoI	RAATTY	4 cut(s)	237, 444, 497, 772
AspS9I	GGNCC	1 cut(s)	919
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	5 cut(s)	113, 244, 298, 440, 470
AsuII	TTCGAA	1 cut(s)	744
AvaII	GGWCC	1 cut(s)	919
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BanII	GRGCYC	1 cut(s)	1030
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	473, 592, 658
BccI	CCATC	1 cut(s)	317
BciVI	GTATCC	2 cut(s)	92, 346
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	548, 880
BfmI	CTRYAG	1 cut(s)	190
BfuI	GTATCC	2 cut(s)	92, 346
BisI	GCNGC	3 cut(s)	462, 606, 672
BlsI	GCNGC	3 cut(s)	463, 607, 673
BmcAI	AGTACT	1 cut(s)	639
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	919
BmgT120I	GGNCC	1 cut(s)	919
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	262, 666, 842
BpiI	GAAGAC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	618, 1014
BpuMI	CCSGG	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	928
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	390
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	928
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	863
BseXI	GCAGC	3 cut(s)	473, 592, 658
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	3 cut(s)	24, 58, 146
BslI	CCNNNNNNNGG	1 cut(s)	928
BsmAI	GTCTC	2 cut(s)	548, 880
BsmFI	GGGAC	3 cut(s)	24, 58, 146
Bsp119I	TTCGAA	1 cut(s)	744
Bsp1286I	GDGCHC	1 cut(s)	1030
Bsp143I	GATC	5 cut(s)	57, 208, 475, 646, 850
BspCNI	CTCAG	1 cut(s)	864
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	2 cut(s)	27, 954
BspT104I	TTCGAA	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	620
BssMI	GATC	5 cut(s)	57, 208, 475, 646, 850
Bst4CI	ACNGT	3 cut(s)	551, 862, 891
Bst6I	CTCTTC	4 cut(s)	27, 144, 954, 981
BstBI	TTCGAA	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	872
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	5 cut(s)	60, 211, 478, 649, 853
BstMAI	GTCTC	2 cut(s)	548, 880
BstMBI	GATC	5 cut(s)	57, 208, 475, 646, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	944
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	473, 592, 658
BstV2I	GAAGAC	1 cut(s)	150
BsuI	GTATCC	2 cut(s)	92, 346
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	731
CciI	TCATGA	1 cut(s)	1066
Cfr13I	GGNCC	1 cut(s)	919
Csp6I	GTAC	3 cut(s)	137, 195, 638
CspCI	CAANNNNNGTGG	2 cut(s)	971, 1006
CviAII	CATG	4 cut(s)	395, 575, 739, 1067
CviQI	GTAC	3 cut(s)	137, 195, 638
DdeI	CTNAG	1 cut(s)	872
DpnI	GATC	5 cut(s)	59, 210, 477, 648, 852
DpnII	GATC	5 cut(s)	57, 208, 475, 646, 850
Eam1104I	CTCTTC	4 cut(s)	27, 144, 954, 981
EarI	CTCTTC	4 cut(s)	27, 144, 954, 981
Eco24I	GRGCYC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	651, 992
EcoRI	GAATTC	2 cut(s)	497, 772
EcoT38I	GRGCYC	1 cut(s)	1030
FaeI	CATG	4 cut(s)	398, 578, 742, 1070
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 508, 540
FaqI	GGGAC	3 cut(s)	24, 58, 146
FatI	CATG	4 cut(s)	394, 574, 738, 1066
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	462, 606, 672
FokI	GGATG	1 cut(s)	240
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	3 cut(s)	462, 606, 672
GluI	GCNGC	3 cut(s)	462, 606, 672
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	4 cut(s)	398, 578, 742, 1070
HinfI	GANTC	3 cut(s)	598, 629, 651
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	5 cut(s)	113, 244, 298, 440, 470
Hpy166II	GTNNAC	3 cut(s)	521, 899, 919
Hpy188I	TCNGA	6 cut(s)	86, 340, 473, 873, 968, 1009
Hpy8I	GTNNAC	3 cut(s)	521, 899, 919
HpyAV	CCTTC	5 cut(s)	68, 242, 292, 534, 675
HpyCH4III	ACNGT	3 cut(s)	551, 862, 891
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	461, 561, 657, 833, 879
HpyF10VI	GCNNNNNNNGC	1 cut(s)	944
HpyF3I	CTNAG	1 cut(s)	872
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	398, 578, 742, 1070
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	57, 208, 475, 646, 850
LguI	GCTCTTC	2 cut(s)	27, 954
Lsp1109I	GCAGC	3 cut(s)	473, 592, 658
LweI	GCATC	3 cut(s)	262, 666, 842
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	101, 569
MalI	GATC	5 cut(s)	59, 210, 477, 648, 852
MboI	GATC	5 cut(s)	57, 208, 475, 646, 850
MhlI	GDGCHC	1 cut(s)	1030
MluCI	AATT	6 cut(s)	237, 444, 497, 772, 837, 941
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	1 cut(s)	991
MnlI	CCTC	7 cut(s)	71, 92, 551, 580, 680, 867, 921
MseI	TTAA	4 cut(s)	422, 761, 1050, 1075
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	944
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	5 cut(s)	57, 208, 475, 646, 850
NlaIII	CATG	4 cut(s)	398, 578, 742, 1070
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	744
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	1066
PciI	ACATGT	1 cut(s)	738
PciSI	GCTCTTC	2 cut(s)	27, 954
PfeI	GAWTC	2 cut(s)	598, 629
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	463, 607, 673
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PscI	ACATGT	1 cut(s)	738
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	919
PsrI	GAACNNNNNNTAC	2 cut(s)	786, 818
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	3 cut(s)	138, 196, 639
RsaNI	GTAC	3 cut(s)	137, 195, 638
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	2 cut(s)	27, 954
SaqAI	TTAA	4 cut(s)	422, 761, 1050, 1075
SatI	GCNGC	3 cut(s)	462, 606, 672
Sau3AI	GATC	5 cut(s)	57, 208, 475, 646, 850
Sau96I	GGNCC	1 cut(s)	919
ScaI	AGTACT	1 cut(s)	639
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	1030
SfaNI	GCATC	3 cut(s)	262, 666, 842
SfcI	CTRYAG	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	744
SinI	GGWCC	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	633, 1029
SmoI	CTYRAG	2 cut(s)	633, 1029
Sse9I	AATT	6 cut(s)	237, 444, 497, 772, 837, 941
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	3 cut(s)	551, 862, 891
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	25, 649, 744
TasI	AATT	6 cut(s)	237, 444, 497, 772, 837, 941
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	598, 629
Tru1I	TTAA	4 cut(s)	422, 761, 1050, 1075
Tru9I	TTAA	4 cut(s)	422, 761, 1050, 1075
TscAI	CASTG	1 cut(s)	731
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	461, 605, 671
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	315, 402, 510
TspRI	CASTG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	919
XapI	RAATTY	4 cut(s)	237, 444, 497, 772
XceI	RCATGY	1 cut(s)	742
ZrmI	AGTACT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.