Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

9474027 .. 9474990

Gene Structure 964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGGAAGTATATCATGATGAACCTGAAAAATTTAATCATATTCTCCACCTCATACGTGATTATTTTAATCATAGAGACGATAGAGCTAGAATCACTGCATGTATGGGGGAACTCATGAGAGATCACTTGAACCTGCTTGTTCGTTTCTTTGACTTCTTTCCAGCTGAGGCTAGCGAAGGGTTAGCCCAACTTCAAACCATTGCTGCAACAAGCGTATCACCGGATTCTACTATTGATGATGCGGTTTCATACATCAACACTGTCAAGGAAGCATTTCATGATGAACCTGCAAAGTATTACGAGTTTTTCCAGCTCTTTTATGATATCAGGTATAGATTAATTGATGTTGCTGGTGGCATTACAAGGGTGGAGGAACTCTTGAAAGCTCACAAGAATCTGCTTGTCCGTTTGAATGCCTTCCTTCCACCTGAGGCTCAGAGAATCCTCCATCTCAAGATTGAGCAACGGGCTGCATCTGATATTAACAAAAGAAAACGTGTAGCGAGTTTTATCGGCAAGCTTAAGGAAAGGTTCCAGGGGGATGATCGTCATGTATATGAGTCGTTTCTCGAGATATTGACAATGTACCAAGAAGGAAACAAGTCCGTGAATGACTTGTACCAGGAGGTAGGGTTCTTGGTTGGGACACTTTGGTTGGATTACACTTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

225

Amino Acids

26.37

Weight (kDa)

5.49

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	98 - 142	2.6e-08	Paired amphipathic helix repeat
PAH	PF02671	185 - 212	7.8e-07	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	144, 298
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	2 cut(s)	590, 623
AflII	CTTAAG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	133, 197, 385, 415
AjnI	CCWGG	2 cut(s)	537, 624
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	89, 167, 316, 389, 523
AluI	AGCT	5 cut(s)	89, 167, 316, 389, 523
Alw26I	GTCTC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	572
ApeKI	GCWGC	2 cut(s)	206, 473
ApoI	RAATTY	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	2 cut(s)	276, 419
AsuHPI	GGTGA	1 cut(s)	213
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	193, 460
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	2 cut(s)	539, 626
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	90, 174
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	2 cut(s)	144, 298
BisI	GCNGC	2 cut(s)	207, 474
BlsI	GCNGC	2 cut(s)	208, 475
Bme1390I	CCNGG	2 cut(s)	539, 626
BmeT110I	CYCGRG	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	2 cut(s)	539, 626
BmsI	GCATC	2 cut(s)	232, 485
BmtI	GCTAGC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	539, 626
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	550
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	159, 423, 452
BseXI	GCAGC	2 cut(s)	193, 460
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	661
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	124, 547
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	160, 424, 451
BspHI	TCATGA	3 cut(s)	16, 117, 280
BspLI	GGNNCC	1 cut(s)	536
BspMI	ACCTGC	2 cut(s)	144, 298
BspOI	GCTAGC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	124, 547
Bst2UI	CCWGG	2 cut(s)	539, 626
Bst4CI	ACNGT	1 cut(s)	265
BstAFI	CTTAAG	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	175, 521
BstDEI	CTNAG	4 cut(s)	168, 432, 438, 675
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	127, 550
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	124, 547
BstNI	CCWGG	2 cut(s)	539, 626
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	537, 624
BstV1I	GCAGC	2 cut(s)	193, 460
Bsu36I	CCTNAGG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 261
BveI	ACCTGC	2 cut(s)	144, 298
Cac8I	GCNNGC	2 cut(s)	175, 521
CciI	TCATGA	3 cut(s)	16, 117, 280
Csp6I	GTAC	2 cut(s)	589, 622
CviAII	CATG	5 cut(s)	17, 102, 118, 281, 554
CviJI	RGCY	9 cut(s)	89, 167, 173, 188, 316, 389, 437, 473, 523
CviKI_1	RGCY	9 cut(s)	89, 167, 173, 188, 316, 389, 437, 473, 523
CviQI	GTAC	2 cut(s)	589, 622
DdeI	CTNAG	4 cut(s)	168, 432, 438, 675
DpnI	GATC	2 cut(s)	126, 549
DpnII	GATC	2 cut(s)	124, 547
Eco32I	GATATC	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	537, 624
EcoRV	GATATC	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	5 cut(s)	20, 105, 121, 284, 557
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	5 cut(s)	16, 101, 117, 280, 553
Fnu4HI	GCNGC	2 cut(s)	207, 474
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	207, 474
FspBI	CTAG	2 cut(s)	90, 174
GluI	GCNGC	2 cut(s)	207, 474
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	5 cut(s)	20, 105, 121, 284, 557
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	5 cut(s)	93, 227, 397, 444, 563
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	441, 481
Hpy188III	TCNNGA	7 cut(s)	17, 118, 281, 382, 457, 572, 574
HpyAV	CCTTC	4 cut(s)	173, 430, 434, 590
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	58, 499
HpyCH4V	TGCA	4 cut(s)	101, 209, 293, 476
HpyF3I	CTNAG	4 cut(s)	168, 432, 438, 675
HpySE526I	ACGT	2 cut(s)	58, 499
Hsp92II	CATG	5 cut(s)	20, 105, 121, 284, 557
Kzo9I	GATC	2 cut(s)	124, 547
Lsp1109I	GCAGC	2 cut(s)	193, 460
LweI	GCATC	2 cut(s)	232, 485
MaeI	CTAG	2 cut(s)	90, 174
MaeII	ACGT	2 cut(s)	58, 499
MalI	GATC	2 cut(s)	126, 549
MboI	GATC	2 cut(s)	124, 547
MluCI	AATT	2 cut(s)	32, 342
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	6 cut(s)	62, 163, 367, 427, 458, 622
MroXI	GAANNNNTTC	2 cut(s)	276, 419
MseI	TTAA	5 cut(s)	36, 69, 341, 486, 525
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	167
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	539, 626
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	539, 626
NdeII	GATC	2 cut(s)	124, 547
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	5 cut(s)	20, 105, 121, 284, 557
NlaIV	GGNNCC	1 cut(s)	536
NspI	RCATGY	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	572
PagI	TCATGA	3 cut(s)	16, 117, 280
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	276, 419
PfeI	GAWTC	4 cut(s)	93, 227, 397, 444
PkrI	GCNGC	2 cut(s)	208, 475
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Ppu21I	YACGTR	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	537, 624
PspGI	CCWGG	2 cut(s)	537, 624
PspN4I	GGNNCC	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	590, 623
RsaNI	GTAC	2 cut(s)	589, 622
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	5 cut(s)	36, 69, 341, 486, 525
SatI	GCNGC	2 cut(s)	207, 474
Sau3AI	GATC	2 cut(s)	124, 547
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	539, 626
SfaNI	GCATC	2 cut(s)	232, 485
Sfr274I	CTCGAG	1 cut(s)	572
SlaI	CTCGAG	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	3 cut(s)	455, 524, 572
SmoI	CTYRAG	3 cut(s)	455, 524, 572
Sse9I	AATT	2 cut(s)	32, 342
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	90, 174
StyD4I	CCNGG	2 cut(s)	537, 624
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	61, 502
TaqI	TCGA	1 cut(s)	573
TasI	AATT	2 cut(s)	32, 342
TfiI	GAWTC	4 cut(s)	93, 227, 397, 444
Tru1I	TTAA	5 cut(s)	36, 69, 341, 486, 525
Tru9I	TTAA	5 cut(s)	36, 69, 341, 486, 525
TscAI	CASTG	2 cut(s)	103, 268
TseI	GCWGC	2 cut(s)	206, 473
TspDTI	ATGAA	4 cut(s)	36, 240, 269, 300
TspGWI	ACGGA	2 cut(s)	398, 598
TspRI	CASTG	2 cut(s)	103, 268
Vha464I	CTTAAG	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	572
XmnI	GAANNNNTTC	2 cut(s)	276, 419
XspI	CTAG	2 cut(s)	90, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.