Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

27321584 .. 27322073

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG273000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTTCCGGGACTGATTTCGTTTCGAGAAGAAGAGCTTTCAGGGACTTCCAAGATGATCAATAAGACAACAGAAGGAGGTATCCGAAAACTTACCAGAGGTGACTACTTCACATATCTAAAGGCAGTAAGGGACGTACTTGAAGACGAAGAGAAAATCTACCACGACTTCACTCAACTCCTGAAAGACTATAGTACCCAAAGACTTGATCTTGAAAGTGTGATAGATATGGTGAAAATTTTATTTGAAGGGCATCCAGATTTACTAATGGGTTTCAATACCTTCTTGCCAAAGGGATATGAAATCACCATCACACCAGCCACTCCTGATTTCGTATCCGAAGAAGCTCTCACTTTTGTGAAAAGGGTGAAAACAAGTCCAGAATTTTCCCAAAGGTTGCAGCACTTTTCCGAGATCACCCAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

142

Amino Acids

16.39

Weight (kDa)

5.09

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	53 - 96	3.8e-15	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	237, 383
AfaI	GTAC	2 cut(s)	138, 196
AgsI	TTSAA	4 cut(s)	143, 215, 248, 277
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	37, 347
AluI	AGCT	2 cut(s)	37, 347
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	2 cut(s)	237, 383
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	5 cut(s)	113, 244, 298, 379, 409
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	317
BciVI	GTATCC	2 cut(s)	92, 346
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	190
BfuI	GTATCC	2 cut(s)	92, 346
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	3 cut(s)	24, 58, 146
BsmFI	GGGAC	3 cut(s)	24, 58, 146
Bsp143I	GATC	3 cut(s)	57, 208, 414
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	27
BssMI	GATC	3 cut(s)	57, 208, 414
Bst6I	CTCTTC	2 cut(s)	27, 144
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	60, 211, 417
BstMBI	GATC	3 cut(s)	57, 208, 414
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	150
BsuI	GTATCC	2 cut(s)	92, 346
BtsCI	GGATG	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	137, 195
CviJI	RGCY	3 cut(s)	37, 320, 347
CviKI_1	RGCY	3 cut(s)	37, 320, 347
CviQI	GTAC	2 cut(s)	137, 195
DpnI	GATC	3 cut(s)	59, 210, 416
DpnII	GATC	3 cut(s)	57, 208, 414
Eam1104I	CTCTTC	2 cut(s)	27, 144
EarI	CTCTTC	2 cut(s)	27, 144
FaiI	YATR	4 cut(s)	115, 192, 230, 300
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	3 cut(s)	24, 58, 146
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	401
GluI	GCNGC	1 cut(s)	401
HapII	CCGG	1 cut(s)	8
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	5 cut(s)	113, 244, 298, 379, 409
Hpy188I	TCNGA	3 cut(s)	86, 340, 412
Hpy188III	TCNNGA	6 cut(s)	26, 181, 212, 257, 326, 380
HpyAV	CCTTC	3 cut(s)	68, 242, 292
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	400
HpySE526I	ACGT	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 208, 414
LguI	GCTCTTC	1 cut(s)	27
LpnPI	CCDG	8 cut(s)	21, 27, 109, 194, 270, 330, 339, 393
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	59, 210, 416
MboI	GATC	3 cut(s)	57, 208, 414
MboII	GAAGA	5 cut(s)	41, 44, 155, 161, 353
MluCI	AATT	2 cut(s)	237, 383
MnlI	CCTC	2 cut(s)	71, 92
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	9
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	57, 208, 414
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	2 cut(s)	138, 196
RsaNI	GTAC	2 cut(s)	137, 195
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	27
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	57, 208, 414
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	7 cut(s)	39, 82, 103, 138, 284, 349, 398
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	237, 383
StyD4I	CCNGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	25
TasI	AATT	2 cut(s)	237, 383
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	315
XapI	RAATTY	2 cut(s)	237, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.