Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

38734573 .. 38735259

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g39040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAACCAACAAAAAGCGAGTCTTTGGCATATTTGAGGGAGGCGAAGGAGGTATTTGCAAAGCAAGGCAAGATTGAAAACTTCCACCACTTTGTTCAGCTCCTCCAAGACTTCCGGTCCAAAAAATTTGGAGCCACCGCTGTCGTTCGCATCGTCAAACAGCTCTTCCAAGGACACCCTCATCTACTCTTAGGTTTCAATGCCTTCTTGCCCAAGGAACATCAAATTACCTCTCAACCCTGCCCTCTTCCTCCTCTTGCTTTCCGAGAAGCCCTTGATTTTGTCAACAAGGTCAAGACCCGACTGCTATGCGAAAGCCGAGATGATGATGATGATGATGTTTATGAGTCTTTTACAAACATTATGCCTAGTTACAGAATGATCAGCAGGTCATCCAAACAAAAACGAAAGGCTAATTCTAGTAGTACTAGTAGTTCTGAATCTAGTGACAATAACCGCGAGGCTACTGAGGTAATTTACCGCAAGGTTGCAGCTCTTTTCAAAGACCACCCAGATTTACTACAAGAATTCACTCGCTTTCTACCCCCTCTTCGTCAAGATTACCATAGTTACCTTGAAGTAACAACAGTAAAAGATAAAGACCACTCGCGCTGTAGTAACTGCACTCCAAGCTATTGCTTGCTGCGAAAGAATTACTCATATATCATTGTCATCAACACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAH Sin3_corepress

Protein Analysis

229

Amino Acids

26.42

Weight (kDa)

9.11

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	27 - 70	1.4e-11	Paired amphipathic helix repeat
PAH	PF02671	113 - 181	5.4e-09	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccII	CGCG	2 cut(s)	459, 610
AciI	CCGC	3 cut(s)	138, 457, 481
AcsI	RAATTY	2 cut(s)	125, 527
AdeI	CACNNNGTG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	77, 199, 502, 578
AhdI	GACNNNNNGTC	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	428
AluBI	AGCT	4 cut(s)	100, 163, 494, 633
AluI	AGCT	4 cut(s)	100, 163, 494, 633
ApeKI	GCWGC	2 cut(s)	491, 643
ApoI	RAATTY	2 cut(s)	125, 527
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	503, 630
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BclI	TGATCA	1 cut(s)	381
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	4 cut(s)	369, 420, 429, 444
BfmI	CTRYAG	1 cut(s)	613
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	2 cut(s)	492, 644
BlsI	GCNGC	2 cut(s)	493, 645
BmcAI	AGTACT	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	117
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	169, 213
BsaWI	WCCGGW	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	169, 213
BseGI	GGATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	2 cut(s)	92, 243
BseXI	GCAGC	2 cut(s)	503, 630
BsgI	GTGCAG	1 cut(s)	607
Bsh1236I	CGCG	2 cut(s)	459, 610
BsiSI	CCGG	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	138, 457, 481
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	459, 610
BspLI	GGNNCC	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	169, 213
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	169, 213
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	3 cut(s)	170, 252, 555
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	2 cut(s)	190, 468
BstF5I	GGATG	1 cut(s)	392
BstFNI	CGCG	2 cut(s)	459, 610
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	630
BstSFI	CTRYAG	1 cut(s)	613
BstUI	CGCG	2 cut(s)	459, 610
BstV1I	GCAGC	2 cut(s)	503, 630
BtsCI	GGATG	1 cut(s)	392
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	426
CviJI	RGCY	9 cut(s)	100, 134, 163, 272, 318, 413, 464, 494, 633
CviKI_1	RGCY	9 cut(s)	100, 134, 163, 272, 318, 413, 464, 494, 633
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	2 cut(s)	190, 468
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
DraIII	CACNNNGTG	1 cut(s)	684
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	170, 252, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	3 cut(s)	170, 252, 555
Eco130I	CCWWGG	2 cut(s)	169, 213
Eco47I	GGWCC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	527
EcoT14I	CCWWGG	2 cut(s)	169, 213
ErhI	CCWWGG	2 cut(s)	169, 213
FaiI	YATR	7 cut(s)	31, 310, 345, 365, 567, 661, 663
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	492, 644
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	2 cut(s)	492, 644
FspBI	CTAG	4 cut(s)	369, 420, 429, 444
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	2 cut(s)	492, 644
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	612
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	20, 347, 440
HpaII	CCGG	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	266, 439
Hpy188III	TCNNGA	2 cut(s)	295, 557
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	40, 214
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	3 cut(s)	59, 491, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	630
HpyF3I	CTNAG	2 cut(s)	190, 468
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	381
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	105, 131
LpnPI	CCDG	4 cut(s)	128, 253, 373, 525
Lsp1109I	GCAGC	2 cut(s)	503, 630
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	4 cut(s)	369, 420, 429, 444
MaeIII	GTNAC	5 cut(s)	371, 446, 569, 580, 617
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	3 cut(s)	157, 239, 542
MluCI	AATT	6 cut(s)	125, 225, 415, 474, 527, 652
MlyI	GAGTC	2 cut(s)	29, 356
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	115
MvnI	CGCG	2 cut(s)	459, 610
MwoI	GCNNNNNNNGC	1 cut(s)	630
NdeII	GATC	1 cut(s)	381
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	493, 645
PleI	GAGTC	2 cut(s)	28, 355
PpsI	GAGTC	2 cut(s)	28, 355
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	117
PsrI	GAACNNNNNNTAC	2 cut(s)	418, 450
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	2 cut(s)	492, 644
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	2 cut(s)	29, 356
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	613
SinI	GGWCC	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	6 cut(s)	125, 225, 415, 474, 527, 652
SsiI	CCGC	3 cut(s)	138, 457, 481
SspMI	CTAG	4 cut(s)	369, 420, 429, 444
StyI	CCWWGG	2 cut(s)	169, 213
TaaI	ACNGT	1 cut(s)	589
TasI	AATT	6 cut(s)	125, 225, 415, 474, 527, 652
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	440
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	491, 643
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	2 cut(s)	125, 527
XspI	CTAG	4 cut(s)	369, 420, 429, 444
ZrmI	AGTACT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.