Paired amphipathic helix protein Sin3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280 |
| fragaria_vesca | FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630 |
| malus_domestica | MD08G1247800.v1.1 |
| pyrus_communis | pycom08g21470 pycom15g39040 |
| rosa_chinensis | RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841 |
| rosa_laevigata | RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064 |
| rosa_multiflora | Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150 |
| rosa_rugosa | Rorug04G0400000 Rorug04G0400100 |
| rosa_samantha | Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900 |
| rosa_wichuraiana | Rw5G002120 Rw5G002140 Rw7G021870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 34 |
| AcuI | CTGAAG | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 190 |
| AgsI | TTSAA | 4 cut(s) | 39, 77, 110, 173 |
| AluBI | AGCT | 2 cut(s) | 61, 323 |
| AluI | AGCT | 2 cut(s) | 61, 323 |
| Alw26I | GTCTC | 1 cut(s) | 142 |
| ApoI | RAATTY | 1 cut(s) | 34 |
| AspS9I | GGNCC | 1 cut(s) | 181 |
| AsuII | TTCGAA | 1 cut(s) | 6 |
| AvaII | GGWCC | 1 cut(s) | 181 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| BcoDI | GTCTC | 1 cut(s) | 142 |
| Bme18I | GGWCC | 1 cut(s) | 181 |
| BmgT120I | GGNCC | 1 cut(s) | 181 |
| BmsI | GCATC | 1 cut(s) | 104 |
| Bpu14I | TTCGAA | 1 cut(s) | 6 |
| BpuEI | CTTGAG | 1 cut(s) | 276 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 190 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 190 |
| BseMII | CTCAG | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 190 |
| BsmAI | GTCTC | 1 cut(s) | 142 |
| Bsp119I | TTCGAA | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| Bsp143I | GATC | 1 cut(s) | 112 |
| BspCNI | CTCAG | 1 cut(s) | 126 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspQI | GCTCTTC | 1 cut(s) | 216 |
| BspT104I | TTCGAA | 1 cut(s) | 6 |
| BssMI | GATC | 1 cut(s) | 112 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 153 |
| Bst6I | CTCTTC | 2 cut(s) | 216, 243 |
| BstBI | TTCGAA | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 134 |
| BstKTI | GATC | 1 cut(s) | 115 |
| BstMAI | GTCTC | 1 cut(s) | 142 |
| BstMBI | GATC | 1 cut(s) | 112 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| CciI | TCATGA | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 1 cut(s) | 181 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 233, 268 |
| CviAII | CATG | 1 cut(s) | 329 |
| CviJI | RGCY | 5 cut(s) | 61, 169, 209, 290, 323 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 169, 209, 290, 323 |
| DdeI | CTNAG | 1 cut(s) | 134 |
| DpnI | GATC | 1 cut(s) | 114 |
| DpnII | GATC | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 2 cut(s) | 216, 243 |
| EarI | CTCTTC | 2 cut(s) | 216, 243 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 1 cut(s) | 254 |
| EcoRI | GAATTC | 1 cut(s) | 34 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| FaeI | CATG | 1 cut(s) | 332 |
| FaiI | YATR | 6 cut(s) | 17, 156, 221, 298, 300, 330 |
| FatI | CATG | 1 cut(s) | 328 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| Hin1II | CATG | 1 cut(s) | 332 |
| Hpy166II | GTNNAC | 2 cut(s) | 161, 181 |
| Hpy188I | TCNGA | 3 cut(s) | 135, 230, 271 |
| Hpy188III | TCNNGA | 2 cut(s) | 107, 329 |
| Hpy8I | GTNNAC | 2 cut(s) | 161, 181 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 153 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 141 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 1 cut(s) | 134 |
| Hsp92II | CATG | 1 cut(s) | 332 |
| Kzo9I | GATC | 1 cut(s) | 112 |
| LguI | GCTCTTC | 1 cut(s) | 216 |
| LpnPI | CCDG | 2 cut(s) | 197, 228 |
| LweI | GCATC | 1 cut(s) | 104 |
| MalI | GATC | 1 cut(s) | 114 |
| MboI | GATC | 1 cut(s) | 112 |
| MboII | GAAGA | 4 cut(s) | 82, 122, 203, 260 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MluCI | AATT | 3 cut(s) | 34, 99, 203 |
| MmeI | TCCRAC | 1 cut(s) | 253 |
| MnlI | CCTC | 2 cut(s) | 129, 183 |
| MseI | TTAA | 3 cut(s) | 23, 312, 337 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NdeII | GATC | 1 cut(s) | 112 |
| NlaIII | CATG | 1 cut(s) | 332 |
| NspV | TTCGAA | 1 cut(s) | 6 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PciSI | GCTCTTC | 1 cut(s) | 216 |
| PspPI | GGNCC | 1 cut(s) | 181 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 48, 80 |
| SapI | GCTCTTC | 1 cut(s) | 216 |
| SaqAI | TTAA | 3 cut(s) | 23, 312, 337 |
| Sau3AI | GATC | 1 cut(s) | 112 |
| Sau96I | GGNCC | 1 cut(s) | 181 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SetI | ASST | 5 cut(s) | 63, 140, 186, 312, 325 |
| SfaNI | GCATC | 1 cut(s) | 104 |
| SfuI | TTCGAA | 1 cut(s) | 6 |
| SinI | GGWCC | 1 cut(s) | 181 |
| SmlI | CTYRAG | 1 cut(s) | 291 |
| SmoI | CTYRAG | 1 cut(s) | 291 |
| Sse9I | AATT | 3 cut(s) | 34, 99, 203 |
| TaaI | ACNGT | 2 cut(s) | 124, 153 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TasI | AATT | 3 cut(s) | 34, 99, 203 |
| Tru1I | TTAA | 3 cut(s) | 23, 312, 337 |
| Tru9I | TTAA | 3 cut(s) | 23, 312, 337 |
| VpaK11BI | GGWCC | 1 cut(s) | 181 |
| XapI | RAATTY | 1 cut(s) | 34 |