Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

9515114 .. 9517070

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACCCGTTTCTGTCGTGGTGTTGGTCGTACCGCTCAGGCAAAGAACAGGCATTCGAACGGACAAGGTCGCTGGCCTGCTAAATCTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACCAAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

176

Amino Acids

19.9

Weight (kDa)

10.12

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	17 - 152	8e-33	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	1 cut(s)	210
AfaI	GTAC	3 cut(s)	11, 140, 208
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	79, 124
AluBI	AGCT	3 cut(s)	115, 158, 170
AluI	AGCT	3 cut(s)	115, 158, 170
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	482
AoxI	GGCC	2 cut(s)	129, 251
ApeKI	GCWGC	2 cut(s)	368, 500
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	16, 25, 172
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	380, 512
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	369, 501
BlsI	GCNGC	2 cut(s)	370, 502
BmcAI	AGTACT	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	3 cut(s)	58, 71, 520
BmsI	GCATC	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
Bpu10I	CCTNAGC	2 cut(s)	213, 309
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	331, 351
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	4 cut(s)	79, 227, 288, 300
BseRI	GAGGAG	2 cut(s)	69, 394
BseXI	GCAGC	2 cut(s)	380, 512
BshFI	GGCC	2 cut(s)	131, 253
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	482
BsmI	GAATGC	2 cut(s)	229, 298
BsnI	GGCC	2 cut(s)	131, 253
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	24, 400
Bsp143I	GATC	2 cut(s)	61, 280
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	131, 253
BspCNI	CTCAG	4 cut(s)	78, 226, 289, 301
BspLI	GGNNCC	3 cut(s)	58, 71, 520
BspQI	GCTCTTC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	310
BssMI	GATC	2 cut(s)	61, 280
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	102, 168, 251, 255
BstDEI	CTNAG	4 cut(s)	65, 213, 297, 309
BstF5I	GGATG	2 cut(s)	331, 351
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	64, 283
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	61, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 263
BstNSI	RCATGY	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	380, 512
BsuRI	GGCC	2 cut(s)	131, 253
BtsCI	GGATG	2 cut(s)	331, 351
Cac8I	GCNNGC	4 cut(s)	102, 168, 251, 255
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	10, 139, 207
CviAII	CATG	3 cut(s)	401, 421, 432
CviQI	GTAC	3 cut(s)	10, 139, 207
DdeI	CTNAG	4 cut(s)	65, 213, 297, 309
DpnI	GATC	2 cut(s)	63, 282
DpnII	GATC	2 cut(s)	61, 280
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	3 cut(s)	404, 424, 435
FaiI	YATR	6 cut(s)	107, 155, 391, 402, 422, 433
FatI	CATG	3 cut(s)	400, 420, 431
Fnu4HI	GCNGC	2 cut(s)	369, 501
FokI	GGATG	2 cut(s)	338, 338
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	369, 501
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	369, 501
HaeIII	GGCC	2 cut(s)	131, 253
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	404, 424, 435
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	3 cut(s)	16, 25, 172
Hpy166II	GTNNAC	2 cut(s)	73, 361
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	4 cut(s)	17, 79, 278, 289
Hpy8I	GTNNAC	2 cut(s)	73, 361
HpyAV	CCTTC	2 cut(s)	187, 378
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 263
HpyF3I	CTNAG	4 cut(s)	65, 213, 297, 309
Hsp92II	CATG	3 cut(s)	404, 424, 435
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	61, 280
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	56, 518
LpnPI	CCDG	7 cut(s)	52, 200, 211, 235, 267, 483, 498
Lsp1109I	GCAGC	2 cut(s)	380, 512
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	87
MalI	GATC	2 cut(s)	63, 282
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	2 cut(s)	61, 280
MboII	GAAGA	5 cut(s)	158, 275, 417, 476, 487
MhlI	GDGCHC	2 cut(s)	24, 400
MluCI	AATT	1 cut(s)	269
MnlI	CCTC	3 cut(s)	47, 304, 372
MseI	TTAA	1 cut(s)	529
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	485
Mva1269I	GAATGC	2 cut(s)	229, 298
MwoI	GCNNNNNNNGC	2 cut(s)	56, 263
NdeII	GATC	2 cut(s)	61, 280
NlaIII	CATG	3 cut(s)	404, 424, 435
NlaIV	GGNNCC	3 cut(s)	58, 71, 520
NspI	RCATGY	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	233
PciI	ACATGT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	2 cut(s)	229, 298
PfeI	GAWTC	1 cut(s)	408
PflFI	GACNNNGTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	370, 502
PscI	ACATGT	1 cut(s)	420
PspN4I	GGNNCC	3 cut(s)	58, 71, 520
PspPI	GGNCC	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	243
RsaI	GTAC	3 cut(s)	11, 140, 208
RsaNI	GTAC	3 cut(s)	10, 139, 207
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	2 cut(s)	369, 501
Sau3AI	GATC	2 cut(s)	61, 280
Sau96I	GGNCC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	24, 400
SetI	ASST	7 cut(s)	117, 140, 160, 172, 247, 315, 322
SfaNI	GCATC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	15, 287
SmoI	CTYRAG	2 cut(s)	15, 287
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	233, 330
TasI	AATT	1 cut(s)	269
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TseI	GCWGC	2 cut(s)	368, 500
TspDTI	ATGAA	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	70
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.