Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

61988016 .. 61990605

Gene Structure 2590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0504100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCAATGGCCATATGGGTTCTTTTGGTTTCTCTTCTTGTTGTCTCTGTTTCTGCTGCTACTCAAATGAAAGTTACTAATAACCCTGCGGATGAGTTAGTGGCTGTTCTTAACGCTAACAGAACTGCACACAAATCATCTTCCCTCTATGACAACCCTGGATTGGCCTGCATTGCCTTGCAGTACATAAAAGCGTACGAAGGTGACTGCGGTGCTGTAGGAGGTCCAGATGCCAAGAAGCCAGCTGATTCCGAGTTTGTTGAAGCTTTTGCTCCAAACTGTGGTATCCAAGTCTCAACCCTCTCTCCAATTACCGGTCGTTTACTTGGCTGTGAGACTAAATATGTCCACGCTGCCGAAGCGTTTTCAAACATCTTGATTGAAAGCAGTAAGAGCTTGGACATTCTCTACAATAAGAACCACACTGAAGTCGGAGCTGCCGTGAGTGGCAGCGATGGCGGTTCTCCATATTTCTGGTGTGTGTTGTTCAGCGGCGGCAAAACTAACAGCAGCTTTGTTGCCGAGGGAGGTGTGGTTAAGATAACAAGACCTGGATGCTTTAGTGGTGCGGATGACGAGTGCAGTGGTGCTTATGATTGGTCTAGAAGCAGTCGTGTGTGGGCATTTTTCACCACAGCTCTGATTGCAATGGGGTTTGCCTTTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

223

Amino Acids

23.43

Weight (kDa)

5.15

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	281
AciI	CCGC	6 cut(s)	89, 210, 459, 492, 495, 569
AcoI	YGGCCR	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	185, 197
AfiI	CCNNNNNNNGG	3 cut(s)	163, 281, 314
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	263, 369, 383
AjnI	CCWGG	2 cut(s)	157, 550
AluBI	AGCT	6 cut(s)	245, 266, 396, 437, 513, 638
AluI	AGCT	6 cut(s)	245, 266, 396, 437, 513, 638
Alw26I	GTCTC	3 cut(s)	49, 298, 329
AoxI	GGCC	2 cut(s)	9, 165
ApeKI	GCWGC	5 cut(s)	56, 353, 437, 450, 510
AsiGI	ACCGGT	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	215, 622
AvaII	GGWCC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BalI	TGGCCA	1 cut(s)	11
BbvI	GCAGC	5 cut(s)	43, 340, 424, 462, 522
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	2 cut(s)	159, 552
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	49, 298, 329
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	7 cut(s)	57, 354, 438, 451, 493, 496, 511
BlsI	GCNGC	7 cut(s)	58, 355, 439, 452, 494, 497, 512
Bme1390I	CCNGG	2 cut(s)	159, 552
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	159, 552
BmsI	GCATC	2 cut(s)	220, 545
BsaJI	CCNNGG	2 cut(s)	157, 522
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	6 cut(s)	289, 319, 426, 456, 519, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 281, 314
Bse118I	RCCGGY	1 cut(s)	314
Bse3DI	GCAATG	3 cut(s)	12, 171, 654
BseBI	CCWGG	2 cut(s)	159, 552
BseDI	CCNNGG	2 cut(s)	157, 522
BseGI	GGATG	3 cut(s)	97, 560, 577
BseLI	CCNNNNNNNGG	3 cut(s)	163, 281, 314
BseMI	GCAATG	3 cut(s)	12, 171, 654
BseXI	GCAGC	5 cut(s)	43, 340, 424, 462, 522
BsgI	GTGCAG	2 cut(s)	111, 601
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	11, 167
BshTI	ACCGGT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	315
BsiWI	CGTACG	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	163, 281, 314
BsmAI	GTCTC	3 cut(s)	49, 298, 329
BsnI	GGCC	2 cut(s)	11, 167
BspACI	CCGC	6 cut(s)	89, 210, 459, 492, 495, 569
BspANI	GGCC	2 cut(s)	11, 167
BsrDI	GCAATG	3 cut(s)	12, 171, 654
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	157, 522
Bst2UI	CCWGG	2 cut(s)	159, 552
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	169, 243
BstF5I	GGATG	3 cut(s)	97, 560, 577
BstMAI	GTCTC	3 cut(s)	49, 298, 329
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 359, 393, 456, 644
BstNI	CCWGG	2 cut(s)	159, 552
BstSCI	CCNGG	2 cut(s)	157, 550
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	5 cut(s)	43, 340, 424, 462, 522
BstXI	CCANNNNNNTGG	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	11, 167
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	97, 560, 577
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	2 cut(s)	423, 589
Cac8I	GCNNGC	2 cut(s)	169, 243
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	184, 196
CspAI	ACCGGT	1 cut(s)	314
CviQI	GTAC	2 cut(s)	184, 196
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	157, 550
FaiI	YATR	8 cut(s)	14, 16, 150, 188, 345, 469, 594, 670
FauNDI	CATATG	1 cut(s)	14
Fnu4HI	GCNGC	7 cut(s)	57, 354, 438, 451, 493, 496, 511
FokI	GGATG	3 cut(s)	104, 567, 584
Fsp4HI	GCNGC	7 cut(s)	57, 354, 438, 451, 493, 496, 511
FspBI	CTAG	1 cut(s)	603
GluI	GCNGC	7 cut(s)	57, 354, 438, 451, 493, 496, 511
HaeIII	GGCC	2 cut(s)	11, 167
HapII	CCGG	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	215, 622
Hpy166II	GTNNAC	2 cut(s)	323, 349
Hpy188I	TCNGA	3 cut(s)	253, 434, 642
Hpy188III	TCNNGA	3 cut(s)	227, 376, 603
Hpy8I	GTNNAC	2 cut(s)	323, 349
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	5 cut(s)	128, 171, 181, 582, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 359, 393, 456, 644
LmnI	GCTCC	2 cut(s)	277, 434
Lsp1109I	GCAGC	5 cut(s)	43, 340, 424, 462, 522
LweI	GCATC	2 cut(s)	220, 545
MaeI	CTAG	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	73, 203
MboII	GAAGA	2 cut(s)	26, 132
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	5 cut(s)	155, 215, 311, 517, 521
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	2 cut(s)	111, 537
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	2 cut(s)	245, 492
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	159, 552
MvaI	CCWGG	2 cut(s)	159, 552
MwoI	GCNNNNNNNGC	5 cut(s)	173, 359, 393, 456, 644
NdeI	CATATG	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	248
Pfl23II	CGTACG	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	7 cut(s)	58, 355, 439, 452, 494, 497, 512
Psp6I	CCWGG	2 cut(s)	157, 550
PspGI	CCWGG	2 cut(s)	157, 550
PspLI	CGTACG	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	185, 197
RsaNI	GTAC	2 cut(s)	184, 196
SaqAI	TTAA	2 cut(s)	111, 537
SatI	GCNGC	7 cut(s)	57, 354, 438, 451, 493, 496, 511
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	159, 552
SfaNI	GCATC	2 cut(s)	220, 545
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	6 cut(s)	89, 210, 459, 492, 495, 569
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	157, 550
TaaI	ACNGT	1 cut(s)	281
TasI	AATT	1 cut(s)	309
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	495, 498
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	111, 537
Tru9I	TTAA	2 cut(s)	111, 537
TscAI	CASTG	2 cut(s)	430, 589
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	5 cut(s)	56, 353, 437, 450, 510
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	430, 589
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	602
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.