Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

58245517 .. 58248995

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGAAGTATTCGCAAGAGCCGGACAACAATACCAAGTCCTGCAAAGCCAGAGGCAGCGATCTCCGCGTTCATTTTAAGAACACAAGGGAGACTGCCCATGCAATTCGCAAGATGCCTTTGGTCAAGGCCAAAAGGTATCTGGAGGATGTTTTGGTCCATAAGCAGGCCATTCCATTCACTCGCTTTTGTCGTGGAGTAGGACGAACTGCACAGGCCAAGAATCGCCATTCAAATGGACAGGGACGGTGGCCTGTTAAATCTGCCAAATTCATTCTGGACTTGCTTAAGAATGCCGAGAGCAATGCAGAGGTGAAAGGTTTAGATGTGGATTCGCTCTTCATATCTCATATCCAGGTGAACCAGGCCAGGAAGCAGAGGCGTCGCACATACCGTGCTCATGGAAGAATTAATGCTTACATGTCATCACCATGCCATATTGAGTTAATTTTGTCAGAAAAGGAGGAGGCTGTCAAGAAAGAGGCCGAAACTCAGCTGACTAGTAGGAAAACAGCGAAGACTAGAGCTGTCGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

179

Amino Acids

20.44

Weight (kDa)

10.34

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	17 - 152	3.6e-33	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	234
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	354, 363, 368
AluBI	AGCT	2 cut(s)	496, 527
AluI	AGCT	2 cut(s)	496, 527
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	6 cut(s)	129, 168, 216, 251, 366, 483
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	4 cut(s)	16, 325, 370, 420
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	4 cut(s)	287, 321, 365, 399
BciT130I	CCWGG	3 cut(s)	356, 365, 370
BcoDI	GTCTC	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	501, 522
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	3 cut(s)	356, 365, 370
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	3 cut(s)	356, 365, 370
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	356, 365, 370
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	6 cut(s)	131, 170, 218, 253, 368, 485
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	6 cut(s)	131, 170, 218, 253, 368, 485
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	6 cut(s)	131, 170, 218, 253, 368, 485
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	310
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	3 cut(s)	356, 365, 370
Bst4CI	ACNGT	2 cut(s)	249, 395
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	3 cut(s)	356, 365, 370
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	354, 363, 368
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	6 cut(s)	131, 170, 218, 253, 368, 485
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	371
CviAII	CATG	4 cut(s)	101, 401, 421, 432
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	354, 363, 368
FaeI	CATG	4 cut(s)	104, 404, 424, 435
FaiI	YATR	9 cut(s)	102, 162, 344, 351, 391, 402, 422, 433, 438
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	100, 400, 420, 431
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	2 cut(s)	501, 522
GluI	GCNGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	6 cut(s)	131, 170, 218, 253, 368, 485
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	104, 404, 424, 435
HinfI	GANTC	2 cut(s)	223, 332
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	4 cut(s)	16, 325, 370, 420
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	3 cut(s)	143, 278, 475
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	387
HpyCH4III	ACNGT	2 cut(s)	249, 395
HpyCH4V	TGCA	4 cut(s)	45, 104, 212, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	104, 404, 424, 435
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	344
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	501, 522
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	331, 417, 529
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	4 cut(s)	105, 269, 408, 447
MnlI	CCTC	7 cut(s)	47, 139, 304, 372, 457, 460, 475
MseI	TTAA	6 cut(s)	78, 258, 288, 411, 446, 538
MslI	CAYNNNNRTG	2 cut(s)	234, 430
MspA1I	CMGCKG	1 cut(s)	496
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	356, 365, 370
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	3 cut(s)	356, 365, 370
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	104, 404, 424, 435
NmeAIII	GCCGAG	1 cut(s)	322
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 391
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	223, 332
PkrI	GCNGC	1 cut(s)	59
PscI	ACATGT	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	354, 363, 368
PspGI	CCWGG	3 cut(s)	354, 363, 368
PspPI	GGNCC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	234, 430
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	6 cut(s)	78, 258, 288, 411, 446, 538
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	3 cut(s)	356, 365, 370
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	6 cut(s)	140, 315, 322, 360, 498, 529
SfaNI	GCATC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	234, 430
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	4 cut(s)	105, 269, 408, 447
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	501, 522
StyD4I	CCNGG	3 cut(s)	354, 363, 368
TaaI	ACNGT	2 cut(s)	249, 395
TasI	AATT	4 cut(s)	105, 269, 408, 447
TfiI	GAWTC	2 cut(s)	223, 332
Tru1I	TTAA	6 cut(s)	78, 258, 288, 411, 446, 538
Tru9I	TTAA	6 cut(s)	78, 258, 288, 411, 446, 538
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	62, 262, 331
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	157
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 274
XspI	CTAG	2 cut(s)	501, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.