Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

8452680 .. 8454322

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG112500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAACACAAGGGAGACTGCCCATGCAATTCGCAAGATGCCTTTGGTCAAGGCCAAAAGGTATCTGGAGGATGTTTTGGTCCATAAGCAGGCCATTCCATTCACTCGCTTTTGTCGTGGAGTAGGACGAACTGCTCAGGCCAAGAATCGCCATTCAAATGGACAGGGACGGTGGCCTGTTAAATCTGCCAAATTCATTCTGGACTTGCTTAAGAATGCCGAGAGCAATGCAGAGGTGAAAGGTTTAGATGTGGATTCGCTCTTCATATCTCATATCCAGGTGAACCAGGCCAGGAAGCAGAGGCGTCGCACATACCGTGCTCATGGAAGAATTAATGCTTACATGTCATCACCATGCCATATTGAGTTAATTTTGTCAGAAAAGGAGGAGGCTGTCAAGAAAGAGGCCGAAACTCAGCTGACTAGTAGGAAAACAGCGAAGACCAGAGCTGTCGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

153

Amino Acids

17.45

Weight (kDa)

10.49

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	2 - 126	3.5e-29	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	156
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	3 cut(s)	276, 285, 290
AluBI	AGCT	2 cut(s)	418, 449
AluI	AGCT	2 cut(s)	418, 449
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	6 cut(s)	51, 90, 138, 173, 288, 405
ApoI	RAATTY	1 cut(s)	191
AseI	ATTAAT	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	247, 292, 342
AvaII	GGWCC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	322
BcgI	CGANNNNNNTGC	4 cut(s)	209, 243, 287, 321
BciT130I	CCWGG	3 cut(s)	278, 287, 292
BcoDI	GTCTC	1 cut(s)	8
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	209
Bme1390I	CCNGG	3 cut(s)	278, 287, 292
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	278, 287, 292
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	278, 287, 292
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	149, 428
BseRI	GAGGAG	1 cut(s)	401
BshFI	GGCC	6 cut(s)	53, 92, 140, 175, 290, 407
BsiHKAI	GWGCWC	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	6 cut(s)	53, 92, 140, 175, 290, 407
Bsp1286I	GDGCHC	1 cut(s)	322
BspANI	GGCC	6 cut(s)	53, 92, 140, 175, 290, 407
BspCNI	CTCAG	2 cut(s)	148, 427
BspQI	GCTCTTC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	304
Bst2UI	CCWGG	3 cut(s)	278, 287, 292
Bst4CI	ACNGT	2 cut(s)	171, 317
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	135, 414
BstF5I	GGATG	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	8
BstNI	CCWGG	3 cut(s)	278, 287, 292
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	3 cut(s)	276, 285, 290
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	158
BsuRI	GGCC	6 cut(s)	53, 92, 140, 175, 290, 407
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	293
CviAII	CATG	4 cut(s)	23, 323, 343, 354
CviJI	RGCY	9 cut(s)	53, 92, 140, 175, 290, 392, 407, 418, 449
CviKI_1	RGCY	9 cut(s)	53, 92, 140, 175, 290, 392, 407, 418, 449
DdeI	CTNAG	2 cut(s)	135, 414
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	276, 285, 290
FaeI	CATG	4 cut(s)	26, 326, 346, 357
FaiI	YATR	9 cut(s)	24, 84, 266, 273, 313, 324, 344, 355, 360
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	22, 322, 342, 353
FokI	GGATG	1 cut(s)	83
FspBI	CTAG	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	6 cut(s)	53, 92, 140, 175, 290, 407
HgaI	GACGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	26, 326, 346, 357
HinfI	GANTC	2 cut(s)	145, 254
HphI	GGTGA	3 cut(s)	247, 292, 342
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	65, 200, 397
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	309
HpyCH4III	ACNGT	2 cut(s)	171, 317
HpyCH4V	TGCA	2 cut(s)	26, 230
HpyF3I	CTNAG	2 cut(s)	135, 414
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	4 cut(s)	26, 326, 346, 357
LguI	GCTCTTC	1 cut(s)	266
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	423
MboII	GAAGA	3 cut(s)	253, 339, 451
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	4 cut(s)	27, 191, 330, 369
MnlI	CCTC	6 cut(s)	61, 226, 294, 379, 382, 397
MseI	TTAA	5 cut(s)	180, 210, 333, 368, 460
MslI	CAYNNNNRTG	2 cut(s)	156, 352
MspA1I	CMGCKG	1 cut(s)	418
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	278, 287, 292
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	3 cut(s)	278, 287, 292
NlaIII	CATG	4 cut(s)	26, 326, 346, 357
NmeAIII	GCCGAG	1 cut(s)	244
NspI	RCATGY	1 cut(s)	346
PciI	ACATGT	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	112, 313
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	145, 254
PscI	ACATGT	1 cut(s)	342
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	3 cut(s)	276, 285, 290
PspGI	CCWGG	3 cut(s)	276, 285, 290
PspPI	GGNCC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	418
RseI	CAYNNNNRTG	2 cut(s)	156, 352
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	5 cut(s)	180, 210, 333, 368, 460
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	278, 287, 292
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	62, 237, 244, 282, 420, 451
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	156, 352
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	4 cut(s)	27, 191, 330, 369
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	3 cut(s)	276, 285, 290
TaaI	ACNGT	2 cut(s)	171, 317
TasI	AATT	4 cut(s)	27, 191, 330, 369
TfiI	GAWTC	2 cut(s)	145, 254
Tru1I	TTAA	5 cut(s)	180, 210, 333, 368, 460
Tru9I	TTAA	5 cut(s)	180, 210, 333, 368, 460
TspDTI	ATGAA	3 cut(s)	17, 184, 253
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 196
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.