Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

15476495 .. 15476854

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCTTGATTAAGGCAAAGCGATATCTGGAGGATGTTTTGGTTCACAAGCAAGCCATTCCTTTCGGACGTTTCTGCCGTGGTGTTGGGCGTACAGGTCAGGCCAAGAATAGGCGTTCCAATGGCCAAGGACGCTGGCCTGTGAAATCTGCCAAGTTCATTTTGGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTTTGGATGTTGACTCTCTTGTTGTATCTAACATCCAAGTCAACCAAGCACAGAAGCAAAGACGCCGAACATACCGTGCTCATGGAAGAATCAACCCATACGTGTCGTCTCCGTGCCACATTGAGCTCATTTTGTCTGAAAAGAAGAACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

10.66

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	1 - 114	1.1e-23	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	268
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	306
AgeI	ACCGGT	1 cut(s)	354
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	2 cut(s)	286, 333
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	3 cut(s)	102, 124, 137
AsiGI	ACCGGT	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	286, 333
BceAI	ACGGC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	79, 127
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	79, 127
BseGI	GGATG	3 cut(s)	40, 217, 237
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	104, 126, 139
BshTI	ACCGGT	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	286, 333
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	3 cut(s)	104, 126, 139
Bsp1286I	GDGCHC	2 cut(s)	286, 333
BspANI	GGCC	3 cut(s)	104, 126, 139
BspCNI	CTCAG	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	79, 127
BssNI	GRCGYC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	54, 137
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	40, 217, 237
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	104, 126, 139
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	40, 217, 237
Cac8I	GCNNGC	2 cut(s)	54, 137
Cfr10I	RCCGGY	1 cut(s)	354
CseI	GACGC	2 cut(s)	141, 276
Csp6I	GTAC	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	5 cut(s)	56, 104, 126, 139, 331
CviKI_1	RGCY	5 cut(s)	56, 104, 126, 139, 331
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	277, 288, 304
FatI	CATG	1 cut(s)	286
FokI	GGATG	3 cut(s)	47, 224, 224
FriOI	GRGCYC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	104, 126, 139
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	2 cut(s)	141, 276
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	2 cut(s)	217, 247
HindII	GTYRAC	2 cut(s)	217, 247
HinfI	GANTC	2 cut(s)	218, 294
HpaII	CCGG	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	46, 217, 247
Hpy188I	TCNGA	2 cut(s)	68, 343
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	46, 217, 247
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	2 cut(s)	70, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	70, 306
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	290
LpnPI	CCDG	5 cut(s)	14, 81, 86, 121, 153
MaeII	ACGT	2 cut(s)	70, 306
MboII	GAAGA	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	286, 333
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	12, 174
Msp20I	TGGCCA	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	294
PinAI	ACCGGT	1 cut(s)	354
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	12, 174
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	286, 333
SetI	ASST	4 cut(s)	73, 100, 309, 333
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	2 cut(s)	73, 309
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	12, 174
Tru9I	TTAA	2 cut(s)	12, 174
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.