Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

41418249 .. 41419153

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0244400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGTCGCCCACGGCAAGGATCACGTTCCGCGTAGTAATGTTAGCTCTGGCTCTTCTGGTCGTCTTCTACATGGGTCGTCCTCTCTACTGGAAAATCTCAGCCACCATCCACGAGATCCGCGAAAACAGACAGACCGTTAAGCAAGGTTTGTCGCAGATTGTGCTGGAAGCCCAGAGAACTGTGGGTTGGTATCACGACGAGTCGGATTCGGGTGCCCGCGAAGATCGGGTCGGGAAGAAGGTGGCCACGACCCGGAGGCTGCTGTTCAGTCAGGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048872 GO:0061484 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

94

Amino Acids

10.75

Weight (kDa)

10.34

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	3 cut(s)	33, 123, 222
AciI	CCGC	3 cut(s)	31, 121, 220
AclWI	GGATC	2 cut(s)	29, 112
AcoI	YGGCCR	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	18, 255
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	2 cut(s)	29, 112
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	262
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AsuC2I	CCSGG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	256
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 255
Bse1I	ACTGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	18, 255
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	249
Bsh1236I	CGCG	3 cut(s)	33, 123, 222
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	18, 255
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	21, 117, 226
BspACI	CCGC	3 cut(s)	31, 121, 220
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	3 cut(s)	33, 123, 222
BspHI	TCATGA	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	29, 112
BspQI	GCTCTTC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	21, 117, 226
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	139, 184
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	3 cut(s)	33, 123, 222
BstKTI	GATC	3 cut(s)	24, 120, 229
BstMBI	GATC	3 cut(s)	21, 117, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	3 cut(s)	33, 123, 222
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	281
CviAII	CATG	2 cut(s)	73, 282
CviJI	RGCY	6 cut(s)	47, 53, 104, 173, 248, 262
CviKI_1	RGCY	6 cut(s)	47, 53, 104, 173, 248, 262
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	3 cut(s)	23, 119, 228
DpnII	GATC	3 cut(s)	21, 117, 226
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
FaeI	CATG	2 cut(s)	76, 285
FaiI	YATR	2 cut(s)	74, 283
FatI	CATG	2 cut(s)	72, 281
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	76, 285
HinfI	GANTC	2 cut(s)	203, 209
HpaII	CCGG	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	197, 235, 282
Hpy99I	CGWCG	2 cut(s)	10, 203
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	139, 184
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	76, 285
Kzo9I	GATC	3 cut(s)	21, 117, 226
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	7 cut(s)	35, 44, 76, 152, 188, 260, 269
Lsp1109I	GCAGC	1 cut(s)	249
MaeII	ACGT	1 cut(s)	26
MalI	GATC	3 cut(s)	23, 119, 228
MboI	GATC	3 cut(s)	21, 117, 226
MboII	GAAGA	4 cut(s)	47, 58, 236, 250
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	2 cut(s)	93, 252
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	256
MvnI	CGCG	3 cut(s)	33, 123, 222
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	21, 117, 226
NlaIII	CATG	2 cut(s)	76, 285
NlaIV	GGNNCC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	21, 117, 226
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	5 cut(s)	29, 49, 151, 246, 279
SsiI	CCGC	3 cut(s)	31, 121, 220
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	139, 184
TaiI	ACGT	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.