Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

8575237 .. 8576633

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1117300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACGCCACATTTGTGCAACACAAGGGAAACTGCATTTGCTATCAGAAAGTTGCCCTTGGTCAAGGCAAAGCGATATTTGGAGGATGTTCTGGCTCACAAGCAGGCCATTCCCTTCCGTCGTTTCTGCCGTGGTGTTGGGCGTACTGCCCAGGCAAAGAACAGGCATTCCAATGGGCAAGGACGCTGGCCTGTCAAGTCTGCCAAGTTCATATTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTTTGGATGTTGATTCCCTGATCGTATCTCATATCCAGGTCAACCAAGCACAGAAGCAAAGGCGCCGAACCTACAGGGCTCACGGAAGAATCAACCCATATATGTCATCTCCCTGCCATATTGAGCTGATCCTGTCTGAGAAGGAAGAACCCGTCAAGAAAGAGCCTGAGAGCCAGTTGACAACTAGCAAATCGAAGAAGTCTGCTCTCAGAAGTGGTGCTTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

162

Amino Acids

18.21

Weight (kDa)

10.32

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	7 - 131	1.9e-28	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	2 cut(s)	5, 319
AfaI	GTAC	1 cut(s)	145
AflII	CTTAAG	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	150, 291
AleI	CACNNNNGTG	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	105, 188
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	152, 293
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	322
BfrI	CTTAAG	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	152, 293
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	2 cut(s)	152, 293
BsaHI	GRCGYC	2 cut(s)	5, 319
BsaJI	CCNNGG	3 cut(s)	57, 130, 150
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	152, 293
BseDI	CCNNGG	3 cut(s)	57, 130, 150
BseGI	GGATG	2 cut(s)	91, 268
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	4 cut(s)	225, 384, 414, 478
BseNI	ACTGG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	107, 190
BshNI	GGYRCC	1 cut(s)	318
BsmI	GAATGC	2 cut(s)	166, 235
BsnI	GGCC	2 cut(s)	107, 190
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	276, 384
BspANI	GGCC	2 cut(s)	107, 190
BspCNI	CTCAG	4 cut(s)	226, 385, 415, 477
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	57, 130, 150
BssMI	GATC	2 cut(s)	276, 384
BssNI	GRCGYC	2 cut(s)	5, 319
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	152, 293
BstACI	GRCGYC	2 cut(s)	5, 319
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	105, 188
BstDEI	CTNAG	5 cut(s)	234, 393, 423, 464, 483
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	91, 268
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	2 cut(s)	279, 387
BstMBI	GATC	2 cut(s)	276, 384
BstNI	CCWGG	2 cut(s)	152, 293
BstSCI	CCNGG	2 cut(s)	150, 291
BstSFI	CTRYAG	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	107, 190
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	91, 268
Cac8I	GCNNGC	2 cut(s)	105, 188
CfoI	GCGC	1 cut(s)	321
CseI	GACGC	2 cut(s)	13, 192
Csp6I	GTAC	1 cut(s)	144
CviJI	RGCY	7 cut(s)	95, 107, 190, 335, 382, 421, 429
CviKI_1	RGCY	7 cut(s)	95, 107, 190, 335, 382, 421, 429
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	5 cut(s)	234, 393, 423, 464, 483
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	2 cut(s)	278, 386
DpnII	GATC	2 cut(s)	276, 384
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	150, 291
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	57
FaiI	YATR	6 cut(s)	212, 288, 355, 357, 359, 375
FalI	AAGNNNNNCTT	3 cut(s)	41, 73, 460
FokI	GGATG	2 cut(s)	98, 275
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	107, 190
HgaI	GACGC	2 cut(s)	13, 192
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	2 cut(s)	5, 319
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	2 cut(s)	298, 435
HindII	GTYRAC	2 cut(s)	298, 435
HinfI	GANTC	2 cut(s)	269, 345
Hpy166II	GTNNAC	2 cut(s)	298, 435
Hpy188I	TCNGA	3 cut(s)	47, 394, 467
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	2 cut(s)	298, 435
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	124, 247, 391
HpyCH4V	TGCA	2 cut(s)	18, 35
HpyF3I	CTNAG	5 cut(s)	234, 393, 423, 464, 483
Hsp92I	GRCGYC	2 cut(s)	5, 319
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	276, 384
MaeI	CTAG	1 cut(s)	441
MalI	GATC	2 cut(s)	278, 386
MboI	GATC	2 cut(s)	276, 384
MboII	GAAGA	3 cut(s)	354, 413, 463
MhlI	GDGCHC	1 cut(s)	337
Mly113I	GGCGCC	1 cut(s)	319
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	13, 171
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	152, 293
Mva1269I	GAATGC	2 cut(s)	166, 235
MvaI	CCWGG	2 cut(s)	152, 293
NarI	GGCGCC	1 cut(s)	319
NdeII	GATC	2 cut(s)	276, 384
NlaIV	GGNNCC	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PctI	GAATGC	2 cut(s)	166, 235
PfeI	GAWTC	2 cut(s)	269, 345
PluTI	GGCGCC	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	150, 291
PspGI	CCWGG	2 cut(s)	150, 291
PspN4I	GGNNCC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	2 cut(s)	13, 171
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	276, 384
ScrFI	CCNGG	2 cut(s)	152, 293
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	3 cut(s)	297, 329, 384
SfcI	CTRYAG	1 cut(s)	328
SfoI	GGCGCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	2 cut(s)	13, 171
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	150, 291
StyI	CCWWGG	1 cut(s)	57
TaqI	TCGA	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	269, 345
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	199
TspGWI	ACGGA	2 cut(s)	107, 354
Vha464I	CTTAAG	1 cut(s)	224
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.