FvH4_4g23920

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001814
Physical Location & Seq
Forward (+)
26241796 .. 26243920
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23920.t1

Sequence Viewer

Length: 549 bp
ATGGTGAAGTACTCCAAGGAGCCCGATAATATCACCAAGTCTTGCAAGGCTAGGGGGTCTGACCTCAGAGTTCATTTCAAGAACACAAGGGAGACCGCGTTCTCTATCAGGAAGATGCCCTTGATTAAGGCAAAGCGATATCTGGAGGATGTTTTGGTTCACAAGCAAGCCATTCCTTTCAGACGTTTCTGCCGTGGTGTTGGGCGTACAGCTCAGGCCAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTGAAGTCTGCCAAGTTCATTTTGGATTTGCTCAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTTTGGATGTTGACTCTCTCTACGTATCTCACATCCAAGTCAACCAAGCTCAGAAGCAAAGACGTCGAACATACCGTGCTCATGGAAGAATCAACCCATACATGTCATCTCCATGCCACATTGAGCTCACTTTGGCCGAGAAGGAAGAACCTGTGAAGAAAGAGCCTGACTCCCAATTGGCAACCAGCAAATCCAGGAAGTCTCAAGGTGCTCGCAGTGATTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048872 GO:0061484 GO:0065007 GO:0065008
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

183

Amino Acids

20.78

Weight (kDa)

10.24

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 17 - 151 3.4e-32 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
AccII CGCG 1 cut(s) 98
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 238, 453
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 2 cut(s) 11, 208
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 512
AloI GAACNNNNNNTCC 4 cut(s) 83, 115, 215, 247
AluBI AGCT 3 cut(s) 212, 368, 445
AluI AGCT 3 cut(s) 212, 368, 445
Alw21I GWGCWC 3 cut(s) 400, 447, 532
Alw26I GTCTC 2 cut(s) 86, 525
AoxI GGCC 4 cut(s) 216, 238, 251, 453
AspLEI GCGC 1 cut(s) 249
AsuHPI GGTGA 2 cut(s) 16, 25
BalI TGGCCA 1 cut(s) 240
BanII GRGCYC 2 cut(s) 24, 447
Bbv12I GWGCWC 3 cut(s) 400, 447, 532
BceAI ACGGC 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 1 cut(s) 514
BcoDI GTCTC 2 cut(s) 86, 525
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 250
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 514
BmsI GCATC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 272, 507
BsaAI YACGTR 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 15, 193, 241
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 514
BseDI CCNNGG 3 cut(s) 15, 193, 241
BseGI GGATG 3 cut(s) 154, 331, 351
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 4 cut(s) 79, 227, 288, 383
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 4 cut(s) 218, 240, 253, 455
BsiHKAI GWGCWC 3 cut(s) 400, 447, 532
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 86, 525
BsmI GAATGC 2 cut(s) 229, 298
BsnI GGCC 4 cut(s) 218, 240, 253, 455
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 4 cut(s) 24, 400, 447, 532
BspACI CCGC 1 cut(s) 96
BspANI GGCC 4 cut(s) 218, 240, 253, 455
BspCNI CTCAG 4 cut(s) 78, 226, 289, 382
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 3 cut(s) 15, 193, 241
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 15, 241
Bst2UI CCWGG 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 168, 251, 532
BstDEI CTNAG 4 cut(s) 65, 213, 297, 369
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 3 cut(s) 154, 331, 351
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstMAI GTCTC 2 cut(s) 86, 525
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 514
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 512
BstSNI TACGTA 1 cut(s) 343
BstUI CGCG 1 cut(s) 98
BsuRI GGCC 4 cut(s) 218, 240, 253, 455
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 154, 331, 351
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 168, 251, 532
CfoI GCGC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 10, 207
CviAII CATG 3 cut(s) 401, 421, 432
CviQI GTAC 2 cut(s) 10, 207
DdeI CTNAG 4 cut(s) 65, 213, 297, 369
EaeI YGGCCR 2 cut(s) 238, 453
Ecl136II GAGCTC 1 cut(s) 445
Eco105I TACGTA 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 15, 241
Eco24I GRGCYC 2 cut(s) 24, 447
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 512
EcoRV GATATC 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 15, 241
EcoT38I GRGCYC 2 cut(s) 24, 447
ErhI CCWWGG 2 cut(s) 15, 241
FaeI CATG 3 cut(s) 404, 424, 435
FaiI YATR 5 cut(s) 391, 402, 418, 422, 433
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 3 cut(s) 400, 420, 431
FokI GGATG 3 cut(s) 161, 338, 338
FriOI GRGCYC 2 cut(s) 24, 447
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 4 cut(s) 218, 240, 253, 455
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 3 cut(s) 404, 424, 435
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 2 cut(s) 331, 361
HindII GTYRAC 2 cut(s) 331, 361
HinfI GANTC 4 cut(s) 332, 408, 488, 539
HphI GGTGA 2 cut(s) 16, 25
Hpy166II GTNNAC 3 cut(s) 160, 331, 361
Hpy188I TCNGA 4 cut(s) 61, 68, 182, 372
Hpy188III TCNNGA 4 cut(s) 79, 109, 143, 289
Hpy8I GTNNAC 3 cut(s) 160, 331, 361
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 310, 454
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 3 cut(s) 184, 342, 382
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 4 cut(s) 65, 213, 297, 369
HpySE526I ACGT 3 cut(s) 184, 342, 382
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 3 cut(s) 404, 424, 435
HspAI GCGC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 19
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 51
MaeII ACGT 3 cut(s) 184, 342, 382
MboII GAAGA 4 cut(s) 124, 417, 476, 487
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 4 cut(s) 24, 400, 447, 532
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 494
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 2 cut(s) 326, 482
MnlI CCTC 2 cut(s) 74, 139
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 234, 430
Msp20I TGGCCA 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 514
MunI CAATTG 1 cut(s) 494
Mva1269I GAATGC 2 cut(s) 229, 298
MvaI CCWGG 1 cut(s) 514
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 246
NlaIII CATG 3 cut(s) 404, 424, 435
NlaIV GGNNCC 1 cut(s) 21
NmeAIII GCCGAG 1 cut(s) 481
NspI RCATGY 1 cut(s) 424
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 2 cut(s) 190, 391
PctI GAATGC 2 cut(s) 229, 298
PfeI GAWTC 2 cut(s) 408, 539
PfoI TCCNGGA 1 cut(s) 512
PleI GAGTC 2 cut(s) 326, 482
PpsI GAGTC 2 cut(s) 326, 482
Ppu21I YACGTR 1 cut(s) 343
PscI ACATGT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 512
PspGI CCWGG 1 cut(s) 512
PspN4I GGNNCC 1 cut(s) 21
RsaI GTAC 2 cut(s) 11, 208
RsaNI GTAC 2 cut(s) 10, 207
RseI CAYNNNNRTG 2 cut(s) 234, 430
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 126
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 2 cut(s) 326, 482
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 4 cut(s) 24, 400, 447, 532
SetI ASST 9 cut(s) 66, 187, 214, 345, 370, 385, 447, 472, 529
SfaNI GCATC 1 cut(s) 105
SmiMI CAYNNNNRTG 2 cut(s) 234, 430
SmlI CTYRAG 2 cut(s) 287, 522
SmoI CTYRAG 2 cut(s) 287, 522
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 1 cut(s) 494
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 512
StyI CCWWGG 2 cut(s) 15, 241
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 3 cut(s) 187, 345, 385
TaqI TCGA 1 cut(s) 385
TasI AATT 1 cut(s) 494
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 2 cut(s) 408, 539
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 62, 262
TspRI CASTG 1 cut(s) 541
XceI RCATGY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 1 cut(s) 51
ZraI GACGTC 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.