Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

13747198 .. 13749355

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTGAAGTATTCTAGAGAGCCAGACAACCATACCAAGTCCTGCAAAGCAAAGGGCAATGATCTCCGAGTGCATTTTAAGAACACAAGAGAGACTGCCCATGCTATTCGCAAGCTGCCTTTGATCAAGGCTAAAAGGTATTTGGAGGATGTTTTGGTCCACAAGCAAGCCATTCCATTCCGTCGCTTTTGTCGTGGAGTAGGGCGAACTGCTCAGGCTAAGAATCGCCATTCAAATGGACAGGGACGGTGGCCTGTTAAATCTGCAAAGTTTATTCTCGACTTACTTAAGAATGCTGAGAGTAATGCAGAGGTGAAAGGTTTGGATGTGGATTCGCTTTATGTATCTCATATCCAGGTAAACCAAGCCCAGAAACAAAGACGCCGCACATACCGTGCTCACGGGAGAATTAATCCTTACATGTCATCTCCATGCCATATTGAGTTGATTTTGTCAGAAAAGGAGGAGCCTGTCAAGAGAGAGCCTGAGACTCAGCTGGCGAGTAGGAAAGCAGAGAAGGGTCGAACTCTACGCAGTGGTGCTGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

184

Amino Acids

20.98

Weight (kDa)

10.36

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	385
AcyI	GRCGYC	1 cut(s)	382
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	115, 496
AluI	AGCT	2 cut(s)	115, 496
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	86, 482
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	115, 542
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	16, 325
AvaII	GGWCC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	102, 529
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	86, 482
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	3 cut(s)	116, 385, 543
BlsI	GCNGC	3 cut(s)	117, 386, 544
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	154, 331
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	4 cut(s)	227, 288, 477, 506
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	102, 529
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	86, 482
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	61, 123
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	4 cut(s)	226, 289, 478, 505
BspLI	GGNNCC	1 cut(s)	468
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	64
BssMI	GATC	2 cut(s)	61, 123
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	249, 395
BstACI	GRCGYC	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	113, 168, 498
BstDEI	CTNAG	5 cut(s)	213, 219, 297, 486, 492
BstF5I	GGATG	2 cut(s)	154, 331
BstKTI	GATC	2 cut(s)	64, 126
BstMAI	GTCTC	2 cut(s)	86, 482
BstMBI	GATC	2 cut(s)	61, 123
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	102, 529
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	154, 331
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	113, 168, 498
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	390
CviAII	CATG	3 cut(s)	101, 421, 432
DdeI	CTNAG	5 cut(s)	213, 219, 297, 486, 492
DpnI	GATC	2 cut(s)	63, 125
DpnII	GATC	2 cut(s)	61, 123
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	354
FaeI	CATG	3 cut(s)	104, 424, 435
FaiI	YATR	8 cut(s)	33, 102, 342, 351, 391, 422, 433, 438
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	3 cut(s)	100, 420, 431
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	116, 385, 543
FokI	GGATG	2 cut(s)	161, 338
Fsp4HI	GCNGC	3 cut(s)	116, 385, 543
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	3 cut(s)	116, 385, 543
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	390
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	104, 424, 435
HinfI	GANTC	3 cut(s)	223, 332, 490
HphI	GGTGA	2 cut(s)	16, 325
Hpy166II	GTNNAC	2 cut(s)	160, 361
Hpy188I	TCNGA	2 cut(s)	68, 457
Hpy188III	TCNNGA	3 cut(s)	15, 278, 475
Hpy8I	GTNNAC	2 cut(s)	160, 361
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	249, 395
HpyCH4V	TGCA	4 cut(s)	45, 73, 266, 308
HpyF3I	CTNAG	5 cut(s)	213, 219, 297, 486, 492
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	104, 424, 435
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	61, 123
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	2 cut(s)	102, 529
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	63, 125
MboI	GATC	2 cut(s)	61, 123
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	3 cut(s)	139, 304, 457
MseI	TTAA	5 cut(s)	78, 258, 288, 411, 550
MslI	CAYNNNNRTG	2 cut(s)	234, 430
MspA1I	CMGCKG	1 cut(s)	496
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	61, 123
NlaIII	CATG	3 cut(s)	104, 424, 435
NlaIV	GGNNCC	1 cut(s)	468
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	223, 332
PkrI	GCNGC	3 cut(s)	117, 386, 544
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	234, 430
SaqAI	TTAA	5 cut(s)	78, 258, 288, 411, 550
SatI	GCNGC	3 cut(s)	116, 385, 543
Sau3AI	GATC	2 cut(s)	61, 123
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	6 cut(s)	117, 140, 315, 322, 360, 498
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	234, 430
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	249, 395
TaqI	TCGA	2 cut(s)	279, 523
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	223, 332
Tru1I	TTAA	5 cut(s)	78, 258, 288, 411, 550
Tru9I	TTAA	5 cut(s)	78, 258, 288, 411, 550
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	2 cut(s)	115, 542
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	541
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	157
VspI	ATTAAT	1 cut(s)	411
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.