Rmu_sc0003512.1_g000017

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003512.1
OG0001814
Physical Location & Seq
Reverse (-)
73679 .. 75305
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003512.1_g000017.1.cds

Sequence Viewer

Length: 567 bp
atggtagatcttgctcacgtgaagtactccaaggagcctgataatcccaccaagtcctgcaaggccagaggctcggatctgagagttcatttcaagaacacgagagagaccgcacaggccatcaggaagttgcgattggcgaaggcgaagagttacttggaagatgttttagctcacaagcaagccattccctttcgccggttttgccgtggtgttggtcgaactgctcaggcaaagaaccgccactcaaatggtcaaggacgctggcccgttaagtctgccaagtttgttctcgatttgctcaagaatgccgagagcaatgctgaggtgaaagggctcgatgtggattcgctttatgtctctcacattcaggtcaaccaggctatgaaacaaaggcgtcgcacatatcgtgctcatgggagaatcaacccttatatgtcatctccttgccatattgagttgactttgtcagagaaagaagaggcagtgaaaaaagagactgacactcaattggctccccggaaatcaaggaaaggtcaagccctacacagtggtgcatcttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

188

Amino Acids

21.26

Weight (kDa)

10.24

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 241
AclWI GGATC 1 cut(s) 84
AcvI CACGTG 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 397
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 4 cut(s) 119, 140, 151, 172
AleI CACNNNNGTG 1 cut(s) 552
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 3 cut(s) 101, 364, 491
AlwI GGATC 1 cut(s) 84
AoxI GGCC 3 cut(s) 63, 117, 266
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 340
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 100
BbrPI CACGTG 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 415
BbvCI CCTCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 380
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 101, 364, 491
BglII AGATCT 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 380, 520
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 36, 516
BmrFI CCNGG 2 cut(s) 380, 520
Bpu10I CCTNAGC 2 cut(s) 228, 324
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 520
BsaAI YACGTR 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 397
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 30, 208, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 30, 208, 518
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 3 cut(s) 71, 242, 315
BshFI GGCC 3 cut(s) 65, 119, 268
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 2 cut(s) 199, 520
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 3 cut(s) 101, 364, 491
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 3 cut(s) 65, 119, 268
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 339, 415
Bsp143I GATC 2 cut(s) 7, 76
BspACI CCGC 2 cut(s) 111, 241
BspANI GGCC 3 cut(s) 65, 119, 268
BspCNI CTCAG 3 cut(s) 72, 241, 316
BspLI GGNNCC 2 cut(s) 36, 516
BspPI GGATC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 30, 208, 518
BssMI GATC 2 cut(s) 7, 76
BssNI GRCGYC 1 cut(s) 397
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 2 cut(s) 143, 474
BstACI GRCGYC 1 cut(s) 397
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 183, 266
BstDEI CTNAG 3 cut(s) 80, 228, 324
BstDSI CCRYGG 1 cut(s) 208
BstKTI GATC 2 cut(s) 10, 79
BstMAI GTCTC 3 cut(s) 101, 364, 491
BstMBI GATC 2 cut(s) 7, 76
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 378, 518
BstX2I RGATCY 2 cut(s) 7, 76
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 2 cut(s) 7, 76
BsuRI GGCC 3 cut(s) 65, 119, 268
BtgI CCRYGG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 492, 556
Cac8I GCNNGC 2 cut(s) 183, 266
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 2 cut(s) 270, 386
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 416
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 80, 228, 324
DpnI GATC 2 cut(s) 9, 78
DpnII GATC 2 cut(s) 7, 76
Eam1104I CTCTTC 2 cut(s) 143, 474
EarI CTCTTC 2 cut(s) 143, 474
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 419
FaiI YATR 7 cut(s) 357, 386, 406, 417, 435, 437, 453
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 339
HaeIII GGCC 3 cut(s) 65, 119, 268
HapII CCGG 2 cut(s) 199, 520
HgaI GACGC 2 cut(s) 270, 386
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 1 cut(s) 419
HincII GTYRAC 2 cut(s) 376, 462
HindII GTYRAC 2 cut(s) 376, 462
HinfI GANTC 2 cut(s) 347, 423
HpaII CCGG 2 cut(s) 199, 520
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 376, 462
Hpy188I TCNGA 3 cut(s) 76, 81, 472
Hpy188III TCNNGA 5 cut(s) 94, 124, 293, 304, 564
Hpy8I GTNNAC 2 cut(s) 376, 462
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 60, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 80, 228, 324
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 1 cut(s) 419
Kzo9I GATC 2 cut(s) 7, 76
LmnI GCTCC 2 cut(s) 34, 520
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 9, 78
MboI GATC 2 cut(s) 7, 76
MboII GAAGA 4 cut(s) 160, 173, 491, 552
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 2 cut(s) 7, 76
MhlI GDGCHC 2 cut(s) 339, 415
MluCI AATT 1 cut(s) 509
MnlI CCTC 3 cut(s) 62, 319, 475
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 249, 552
MspI CCGG 2 cut(s) 199, 520
MspR9I CCNGG 2 cut(s) 380, 520
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 204
NciI CCSGG 1 cut(s) 520
NdeII GATC 2 cut(s) 7, 76
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 2 cut(s) 36, 516
NmeAIII GCCGAG 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 347, 423
PflFI GACNNNGTC 1 cut(s) 466
PmaCI CACGTG 1 cut(s) 19
PmlI CACGTG 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 378
PspCI CACGTG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 36, 516
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 2 cut(s) 7, 76
PsyI GACNNNGTC 1 cut(s) 466
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 249, 552
SaqAI TTAA 1 cut(s) 273
Sau3AI GATC 2 cut(s) 7, 76
Sau96I GGNCC 1 cut(s) 267
ScaI AGTACT 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 380, 520
SduI GDGCHC 2 cut(s) 339, 415
SetI ASST 5 cut(s) 21, 175, 330, 375, 538
SmiMI CAYNNNNRTG 2 cut(s) 249, 552
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 509
SsiI CCGC 2 cut(s) 111, 241
StyD4I CCNGG 2 cut(s) 378, 518
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 220, 294, 339
TasI AATT 1 cut(s) 509
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 2 cut(s) 347, 423
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 492, 556
TspDTI ATGAA 2 cut(s) 77, 401
TspRI CASTG 2 cut(s) 492, 556
Tth111I GACNNNGTC 1 cut(s) 466
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.