Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

8652456 .. 8654268

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG109900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCCTTTGGTCAAGGCCAAAAGGTATCTGGAGGATGTTTTGGTCCATAAGCAGGCCATTCCATTCACTCGCTTTTGTCGTGGAGTAGGACGAACTGCTCAGGCCAAGAATCGCCATTCAAATGGACAGGGACGGTGGCCTGTTAAATCTGCCAAATTCATTCTGGACTTGCTTAAGAATGCCGAGAGCAATGCAGAGGTGAAAGGTTTAGATGTGGATTCGCTCTTCATATCTCATATCCAGGTGAACCAGGCCAGGAAGCAGAGGCGTCGCACATACCGTGCTCATGGAAGAATTAATGCTTACATGTCATCACCATGCCATATTGAGTTAATTTTGTCAGAAAAGGAGGAGGCCGTCAAGAAAGAGGCCGAAACTCAGCTGACTAGTAGGAAAACAGCGAAGACTAGAGCTGTCGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

141

Amino Acids

16.04

Weight (kDa)

10.35

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	1 - 114	3.6e-24	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	120
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	3 cut(s)	240, 249, 254
AluBI	AGCT	2 cut(s)	382, 413
AluI	AGCT	2 cut(s)	382, 413
Alw21I	GWGCWC	1 cut(s)	286
AoxI	GGCC	7 cut(s)	15, 54, 102, 137, 252, 354, 369
ApoI	RAATTY	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	211, 256, 306
AvaII	GGWCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 251, 285
BciT130I	CCWGG	3 cut(s)	242, 251, 256
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	2 cut(s)	387, 408
BfrI	CTTAAG	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	242, 251, 256
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmrFI	CCNGG	3 cut(s)	242, 251, 256
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	242, 251, 256
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	113, 392
BseRI	GAGGAG	1 cut(s)	365
BshFI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
Bsp1286I	GDGCHC	1 cut(s)	286
BspANI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
BspCNI	CTCAG	2 cut(s)	112, 391
BspQI	GCTCTTC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	268
Bst2UI	CCWGG	3 cut(s)	242, 251, 256
Bst4CI	ACNGT	2 cut(s)	135, 281
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	99, 378
BstF5I	GGATG	1 cut(s)	40
BstNI	CCWGG	3 cut(s)	242, 251, 256
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	240, 249, 254
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	257
CviAII	CATG	3 cut(s)	287, 307, 318
CviJI	RGCY	9 cut(s)	17, 56, 104, 139, 254, 356, 371, 382, 413
CviKI_1	RGCY	9 cut(s)	17, 56, 104, 139, 254, 356, 371, 382, 413
DdeI	CTNAG	2 cut(s)	99, 378
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	240, 249, 254
FaeI	CATG	3 cut(s)	290, 310, 321
FaiI	YATR	8 cut(s)	48, 230, 237, 277, 288, 308, 319, 324
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	286, 306, 317
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	2 cut(s)	387, 408
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	290, 310, 321
HinfI	GANTC	2 cut(s)	109, 218
HphI	GGTGA	3 cut(s)	211, 256, 306
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	29, 164, 361
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	135, 281
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	99, 378
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	290, 310, 321
LguI	GCTCTTC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	387, 408
MboII	GAAGA	3 cut(s)	217, 303, 415
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	3 cut(s)	155, 294, 333
MnlI	CCTC	6 cut(s)	25, 190, 258, 343, 346, 361
MseI	TTAA	5 cut(s)	144, 174, 297, 332, 424
MslI	CAYNNNNRTG	2 cut(s)	120, 316
MspA1I	CMGCKG	1 cut(s)	382
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	242, 251, 256
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	3 cut(s)	242, 251, 256
NlaIII	CATG	3 cut(s)	290, 310, 321
NmeAIII	GCCGAG	1 cut(s)	208
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	76, 277
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	109, 218
PscI	ACATGT	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	297
Psp6I	CCWGG	3 cut(s)	240, 249, 254
PspGI	CCWGG	3 cut(s)	240, 249, 254
PspPI	GGNCC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	382
RseI	CAYNNNNRTG	2 cut(s)	120, 316
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	5 cut(s)	144, 174, 297, 332, 424
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	242, 251, 256
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	6 cut(s)	26, 201, 208, 246, 384, 415
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	120, 316
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	3 cut(s)	155, 294, 333
SspMI	CTAG	2 cut(s)	387, 408
StyD4I	CCNGG	3 cut(s)	240, 249, 254
TaaI	ACNGT	2 cut(s)	135, 281
TasI	AATT	3 cut(s)	155, 294, 333
TfiI	GAWTC	2 cut(s)	109, 218
Tru1I	TTAA	5 cut(s)	144, 174, 297, 332, 424
Tru9I	TTAA	5 cut(s)	144, 174, 297, 332, 424
TspDTI	ATGAA	2 cut(s)	148, 217
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 160
XspI	CTAG	2 cut(s)	387, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.