Rh2BG675100

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001814
Physical Location & Seq
Reverse (-)
88667111 .. 88668732
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG675100.1

Sequence Viewer

Length: 474 bp
ATGAACACGAGGGAGACCGCACAGGCCATCAGGAAGTTGCGATTGGCGAAGGCGAAGAGTTACTTGGAAGATGTTTTAGCTCACAAGCAAGCCATTCCCTTTCGCCGGTTTTGCCGTGGTGTTGGTCGAACTGCTCAGGCAAAGAACCGCCATTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCTGCCAAGTTTGTTCTCGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGGCTGGATGTGGATTCGCTTTATGTCTCTCACATTCAGGTCAACCAGGCTATGAAACAAAGGCGTCGCACATATCGTGCTCATGGGAGAATCAACCCTTATATGTCATCTCCTTGCCATATTGAGTTGACTTTGTCAGAGAAAGAAGAGGCAGTGAAAAAAGAGCCTGACACTCAATTGGCTCCCCGGAAATCAAGGAAAGGTCAAGCCCTACACAGCGGTGCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

10.41

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 2 - 125 2.2e-29 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 148, 459
AcyI GRCGYC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 156
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 47, 58, 79
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 8, 271
AoxI GGCC 2 cut(s) 24, 173
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 247
BauI CACGAG 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 322
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 287
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 8, 271
Bme1390I CCNGG 2 cut(s) 287, 427
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 2 cut(s) 287, 427
Bpu10I CCTNAGC 2 cut(s) 135, 231
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 115, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 115, 425
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 149, 210, 222
BshFI GGCC 2 cut(s) 26, 175
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 106, 427
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 8, 271
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 2 cut(s) 26, 175
Bso31I GGTCTC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 322
BspACI CCGC 3 cut(s) 18, 148, 459
BspANI GGCC 2 cut(s) 26, 175
BspCNI CTCAG 3 cut(s) 148, 211, 223
BspLI GGNNCC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 115, 425
BssNI GRCGYC 1 cut(s) 304
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 50, 381
BstACI GRCGYC 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 90, 173
BstDEI CTNAG 3 cut(s) 135, 219, 231
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 253
BstMAI GTCTC 2 cut(s) 8, 271
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 285, 425
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 26, 175
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 90, 173
Cfr10I RCCGGY 1 cut(s) 105
CseI GACGC 2 cut(s) 177, 293
CviAII CATG 1 cut(s) 323
CviJI RGCY 9 cut(s) 26, 80, 92, 175, 244, 290, 406, 422, 449
CviKI_1 RGCY 9 cut(s) 26, 80, 92, 175, 244, 290, 406, 422, 449
DdeI CTNAG 3 cut(s) 135, 219, 231
Eam1104I CTCTTC 2 cut(s) 50, 381
EarI CTCTTC 2 cut(s) 50, 381
Eco31I GGTCTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 326
FaiI YATR 7 cut(s) 264, 293, 313, 324, 342, 344, 360
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 1 cut(s) 322
FokI GGATG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 26, 175
HapII CCGG 2 cut(s) 106, 427
HgaI GACGC 2 cut(s) 177, 293
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 1 cut(s) 326
HincII GTYRAC 2 cut(s) 283, 369
HindII GTYRAC 2 cut(s) 283, 369
HinfI GANTC 2 cut(s) 254, 330
HpaII CCGG 2 cut(s) 106, 427
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 283, 369
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 4 cut(s) 31, 200, 211, 471
Hpy8I GTNNAC 2 cut(s) 283, 369
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 3 cut(s) 135, 219, 231
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 1 cut(s) 326
LmnI GCTCC 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 59
MboII GAAGA 4 cut(s) 67, 80, 398, 459
MfeI CAATTG 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 1 cut(s) 416
MnlI CCTC 3 cut(s) 3, 226, 382
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 2 cut(s) 156, 459
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 2 cut(s) 106, 427
MspR9I CCNGG 2 cut(s) 287, 427
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 111
NciI CCSGG 1 cut(s) 427
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 423
OliI CACNNNNGTG 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 254, 330
PflFI GACNNNGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 423
PsyI GACNNNGTC 1 cut(s) 373
RseI CAYNNNNRTG 2 cut(s) 156, 459
SaqAI TTAA 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 287, 427
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 82, 237, 282, 445
SmiMI CAYNNNNRTG 2 cut(s) 156, 459
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 416
SsiI CCGC 3 cut(s) 18, 148, 459
StyD4I CCNGG 2 cut(s) 285, 425
TaqI TCGA 2 cut(s) 127, 201
TasI AATT 1 cut(s) 416
TfiI GAWTC 2 cut(s) 254, 330
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 399
TspDTI ATGAA 2 cut(s) 17, 308
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.