Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

4745039 .. 4747267

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGAACTATTCGCAAGAGCCTGGTAACATTACCAAGTCCTGCAAGGCCAGAGGCAGCGATCTCCGAGTTCATTTCAAGAACACAAGGGAGACTGCCCATGCACTTCGCAAGATGCCTTTGGTCAAGGCCAAAAGGTATCTGGAGGATGTTTTGGTCCATAAGCAGGCCATTCCATTCACTCGATTTTGTCGTGGAGTAGGACGAACTGCTCAGGCCAAGAATCGCCATTCAAATGGACAGGGTCGGTGGCCTGCTAAGTCTGCCAAATTCATTCTGGACTTGCTTAAGAATGCCGAGAGTAATGCAGAGGTGAAAGGTTTAGATGTGGATTCGCTCTTCATATCTCATATCCAGGTGAACCAAGCCAGAAAGCAGAGGCGTCGCACATACCGTGCTCATGGAAGAATTAATGCTTACATGTCATCTCCATGCCATATTGAGTTAATTTTGTCAGAAAAGGAGGAGCCTGTCAAGAAAGAGGCTGAGACTCAGCTCGCTAGTAGGAAAACAGGGAAGACTAGAGCTGTCGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

10.39

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	17 - 152	2.6e-32	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	79, 234
AjnI	CCWGG	2 cut(s)	22, 354
AluBI	AGCT	2 cut(s)	496, 527
AluI	AGCT	2 cut(s)	496, 527
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	86, 482
AoxI	GGCC	5 cut(s)	48, 129, 168, 216, 251
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	16, 325, 370
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	4 cut(s)	287, 321, 365, 399
BciT130I	CCWGG	2 cut(s)	24, 356
BcoDI	GTCTC	2 cut(s)	86, 482
BfaI	CTAG	2 cut(s)	501, 522
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	24, 356
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	24, 356
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	24, 356
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	3 cut(s)	227, 477, 506
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	5 cut(s)	50, 131, 170, 218, 253
BsiHKAI	GWGCWC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	86, 482
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	5 cut(s)	50, 131, 170, 218, 253
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	5 cut(s)	50, 131, 170, 218, 253
BspCNI	CTCAG	3 cut(s)	226, 478, 505
BspLI	GGNNCC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	287
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	24, 356
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	168, 255, 498
BstDEI	CTNAG	4 cut(s)	213, 258, 486, 492
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	86, 482
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	24, 356
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	22, 354
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	5 cut(s)	50, 131, 170, 218, 253
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	3 cut(s)	168, 255, 498
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	371
CviAII	CATG	4 cut(s)	101, 401, 421, 432
DdeI	CTNAG	4 cut(s)	213, 258, 486, 492
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	22, 354
FaeI	CATG	4 cut(s)	104, 404, 424, 435
FaiI	YATR	9 cut(s)	102, 162, 344, 351, 391, 402, 422, 433, 438
FatI	CATG	4 cut(s)	100, 400, 420, 431
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	2 cut(s)	501, 522
GluI	GCNGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	5 cut(s)	50, 131, 170, 218, 253
HgaI	GACGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	104, 404, 424, 435
HinfI	GANTC	3 cut(s)	223, 332, 490
HphI	GGTGA	3 cut(s)	16, 325, 370
Hpy166II	GTNNAC	2 cut(s)	7, 361
Hpy188I	TCNGA	2 cut(s)	68, 457
Hpy188III	TCNNGA	4 cut(s)	79, 143, 278, 475
Hpy8I	GTNNAC	2 cut(s)	7, 361
Hpy99I	CGWCG	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4V	TGCA	3 cut(s)	45, 104, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	4 cut(s)	213, 258, 486, 492
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	104, 404, 424, 435
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	501, 522
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	331, 417, 529
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	3 cut(s)	269, 408, 447
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	6 cut(s)	47, 139, 304, 372, 457, 475
MseI	TTAA	3 cut(s)	288, 411, 446
MslI	CAYNNNNRTG	2 cut(s)	234, 430
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	24, 356
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	2 cut(s)	24, 356
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	104, 404, 424, 435
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	1 cut(s)	322
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 391
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	223, 332
PflFI	GACNNNGTC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	22, 354
PspGI	CCWGG	2 cut(s)	22, 354
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	234, 430
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	288, 411, 446
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	24, 356
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	6 cut(s)	140, 315, 322, 360, 498, 529
SfaNI	GCATC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	234, 430
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	269, 408, 447
SspMI	CTAG	2 cut(s)	501, 522
StyD4I	CCNGG	2 cut(s)	22, 354
TaaI	ACNGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	269, 408, 447
TfiI	GAWTC	2 cut(s)	223, 332
Tru1I	TTAA	3 cut(s)	288, 411, 446
Tru9I	TTAA	3 cut(s)	288, 411, 446
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	62, 262, 331
Tth111I	GACNNNGTC	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	157
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 274
XspI	CTAG	2 cut(s)	501, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.