Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011782.1

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

18697 .. 19423

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011782.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtccttgattaaggcaaagcgatatctggaggatgttttggttcacaagcaagccattccattcagacgtttctgccgtggtgttgggcgtacagctcaggccaagaacaggcattccaatggccagggacgctggcctgtgaaatctgccaagttcattttggatttgcttaagaatgctgagagcaatgctgaagtgaagggtttggatgttgactctcttgttgtatctcacatccaagtcaaccaagcacagaagcaaagacgccgaacataccgtgctcatggaagaatcaacccatacatgtcatctccatgccacattgagctcaccttgtctgaaaaggaagaaccagtgaagaaagagccagactcccaattggcaaccagcaaatccaggaagtctcaagctgttcgcagtggtggttctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048872 GO:0061484 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

10.35

Isoelectric Point (pI)

72.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	268
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	306
AjnI	CCWGG	2 cut(s)	126, 398
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	3 cut(s)	98, 331, 413
AluI	AGCT	3 cut(s)	98, 331, 413
Alw21I	GWGCWC	2 cut(s)	286, 333
Alw26I	GTCTC	1 cut(s)	411
AoxI	GGCC	3 cut(s)	102, 124, 137
AsuHPI	GGTGA	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	286, 333
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	128, 400
BcoDI	GTCTC	1 cut(s)	411
BfrI	CTTAAG	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	128, 400
BmrFI	CCNGG	2 cut(s)	128, 400
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	79, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	128, 400
BseDI	CCNNGG	2 cut(s)	79, 127
BseGI	GGATG	3 cut(s)	40, 217, 237
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	113, 174
BseNI	ACTGG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	104, 126, 139
BsiHKAI	GWGCWC	2 cut(s)	286, 333
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	2 cut(s)	115, 184
BsnI	GGCC	3 cut(s)	104, 126, 139
Bsp1286I	GDGCHC	2 cut(s)	286, 333
BspANI	GGCC	3 cut(s)	104, 126, 139
BspCNI	CTCAG	2 cut(s)	112, 175
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	79, 127
BssNI	GRCGYC	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	128, 400
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	54, 137
BstDEI	CTNAG	2 cut(s)	99, 183
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	40, 217, 237
BstMAI	GTCTC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	128, 400
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	126, 398
BsuRI	GGCC	3 cut(s)	104, 126, 139
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	40, 217, 237
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	363, 427
Cac8I	GCNNGC	2 cut(s)	54, 137
CseI	GACGC	2 cut(s)	141, 276
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	3 cut(s)	287, 307, 318
CviJI	RGCY	8 cut(s)	56, 98, 104, 126, 139, 331, 370, 413
CviKI_1	RGCY	8 cut(s)	56, 98, 104, 126, 139, 331, 370, 413
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	2 cut(s)	99, 183
EaeI	YGGCCR	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	126, 398
EcoRV	GATATC	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	3 cut(s)	290, 310, 321
FaiI	YATR	5 cut(s)	277, 288, 304, 308, 319
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	286, 306, 317
FokI	GGATG	3 cut(s)	47, 224, 224
FriOI	GRGCYC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	104, 126, 139
HgaI	GACGC	2 cut(s)	141, 276
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	290, 310, 321
HincII	GTYRAC	2 cut(s)	217, 247
HindII	GTYRAC	2 cut(s)	217, 247
HinfI	GANTC	3 cut(s)	218, 294, 374
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	3 cut(s)	46, 217, 247
Hpy188I	TCNGA	2 cut(s)	68, 343
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	46, 217, 247
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	99, 183
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	290, 310, 321
MaeII	ACGT	1 cut(s)	70
MboII	GAAGA	3 cut(s)	303, 362, 373
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	286, 333
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	1 cut(s)	380
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	212, 368
MnlI	CCTC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	12, 174
MslI	CAYNNNNRTG	2 cut(s)	120, 316
Msp20I	TGGCCA	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	128, 400
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	2 cut(s)	115, 184
MvaI	CCWGG	2 cut(s)	128, 400
MwoI	GCNNNNNNNGC	1 cut(s)	132
NlaIII	CATG	3 cut(s)	290, 310, 321
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	2 cut(s)	115, 184
PfeI	GAWTC	1 cut(s)	294
PfoI	TCCNGGA	1 cut(s)	398
PleI	GAGTC	2 cut(s)	212, 368
PpsI	GAGTC	2 cut(s)	212, 368
PscI	ACATGT	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	126, 398
PspGI	CCWGG	2 cut(s)	126, 398
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	2 cut(s)	120, 316
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	12, 174
SchI	GAGTC	2 cut(s)	212, 368
ScrFI	CCNGG	2 cut(s)	128, 400
SduI	GDGCHC	2 cut(s)	286, 333
SetI	ASST	5 cut(s)	73, 100, 333, 338, 415
SmiMI	CAYNNNNRTG	2 cut(s)	120, 316
SmlI	CTYRAG	2 cut(s)	173, 408
SmoI	CTYRAG	2 cut(s)	173, 408
Sse9I	AATT	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	126, 398
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	73
TasI	AATT	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	12, 174
Tru9I	TTAA	2 cut(s)	12, 174
TscAI	CASTG	2 cut(s)	363, 427
TspDTI	ATGAA	1 cut(s)	148
TspRI	CASTG	2 cut(s)	363, 427
Vha464I	CTTAAG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.