Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

90670986 .. 90676496

Gene Structure 5511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG689100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGAAGTACTCCAAGGAGCCTGATAATCCCACCAAGTCCTGCAAGGCCAGAGGCTCGGATCTGAGAGTTCATTTCAAGAACACGAGAGAGACCGCACAGGCCATCAGGAAGTTGCGATTGGCGAAGGCGAAGAGTTACTTGGAAGATGTTTTAGCTCACAAGCAAGCCATTCCCTTTCGCCGGTTTTGCCGTGGTGTTGGTCGAACTGCTCAGGCAAAGAACCGCCATTCAAATGGTCAAGGACGCTGGCCCGTTAAGTCTGCCAAGTTTGTTCTCGATTTGCTCAAGAATGCCGAGAGCAATGCTGAGGTGAAAGGGCTCGATGTGGATTCGCTTTATGTCTCTCACATTCAGGTCAACCAGGCTATGAAACAAAGGCGTCGCACATATCGTGCTCATGGGAGAATCAACCCTTATATGTCATCTCCTTGCCATATTGAGTTGACTTTGTCAGAGAAAGAAGAGGCAGTGAAAAAAGAGGTAATCTACAAATTTAATGTTCAGTTACTAAGGGTCAAATATAAAGGAAAAGCAAAATTTGAACTGAAAGTTGCTGTTTGTTTCTGGCATTATTTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

194

Amino Acids

22.48

Weight (kDa)

10.11

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	17 - 151	2.6e-33	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 226
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	494, 539
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	79, 234, 545
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 125, 136, 157
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	86, 349
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	3 cut(s)	48, 102, 251
ApoI	RAATTY	2 cut(s)	494, 539
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	16, 325
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	86, 349
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	365
Bpu10I	CCTNAGC	2 cut(s)	213, 309
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	15, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	15, 193
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	3 cut(s)	56, 227, 300
BshFI	GGCC	3 cut(s)	50, 104, 253
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	86, 349
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	50, 104, 253
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	324, 400
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	96, 226
BspANI	GGCC	3 cut(s)	50, 104, 253
BspCNI	CTCAG	3 cut(s)	57, 226, 301
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	15, 193
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	382
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	365
Bst6I	CTCTTC	2 cut(s)	128, 459
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	168, 251
BstDEI	CTNAG	4 cut(s)	65, 213, 309, 512
BstDSI	CCRYGG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	86, 349
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	50, 104, 253
BtgI	CCRYGG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	168, 251
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	2 cut(s)	255, 371
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	9 cut(s)	22, 50, 57, 104, 158, 170, 253, 322, 368
CviKI_1	RGCY	9 cut(s)	22, 50, 57, 104, 158, 170, 253, 322, 368
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	4 cut(s)	65, 213, 309, 512
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	128, 459
EarI	CTCTTC	2 cut(s)	128, 459
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	404
FaiI	YATR	8 cut(s)	342, 371, 391, 402, 420, 422, 438, 525
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	50, 104, 253
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	2 cut(s)	255, 371
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	404
HincII	GTYRAC	2 cut(s)	361, 447
HindII	GTYRAC	2 cut(s)	361, 447
HinfI	GANTC	2 cut(s)	332, 408
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	16, 325
Hpy166II	GTNNAC	2 cut(s)	361, 447
Hpy188I	TCNGA	3 cut(s)	61, 66, 457
Hpy188III	TCNNGA	4 cut(s)	79, 109, 278, 289
Hpy8I	GTNNAC	2 cut(s)	361, 447
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	4 cut(s)	65, 213, 309, 512
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	137, 507
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	145, 158, 476
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	324, 400
MluCI	AATT	2 cut(s)	494, 539
MnlI	CCTC	4 cut(s)	47, 304, 460, 475
MseI	TTAA	2 cut(s)	258, 498
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	332, 408
PflFI	GACNNNGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	451
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	258, 498
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	324, 400
SetI	ASST	4 cut(s)	160, 315, 360, 486
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	494, 539
SsiI	CCGC	2 cut(s)	96, 226
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	3 cut(s)	205, 279, 324
TasI	AATT	2 cut(s)	494, 539
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	332, 408
Tru1I	TTAA	2 cut(s)	258, 498
Tru9I	TTAA	2 cut(s)	258, 498
TscAI	CASTG	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	62, 386
TspRI	CASTG	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	451
XapI	RAATTY	2 cut(s)	494, 539
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.