Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

9635498 .. 9637516

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCCTTTGGTCAAGGCCAAAAGGTATCTGGAGGATGTTTTGGTCCATAAGCAGGCCATTCCATTCACTCGCTTTTGTCGTGGAGTAGGACGAACTGCTCAGGCCAAGAATCGCCATTCAAATGGACAGGGACGGTGGCCTGTTAAATCTGCCAAATTCATTTTGGACTTGCTTAAGAATGCCGAGAGCAATGCAGAGGTGAAAGGTTTAGATGTGGATTCGCTCTTCATATCTCATATCCAGGTGAACCAGGCCAGGAAGCAGAGGCGTCGCACATACCGTGCTCATGGAAGAATTAATGCTTACATGTCATCACCATGCCATATTGAGTTAATTTTGTCAGAAAAGGAGGAGGCCGTCAAGAAAGAGGCCGAAACTCAGCTGACTAGTAGGAAAACAGCGAAGACTAGAGCTGTCGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

141

Amino Acids

16.04

Weight (kDa)

10.35

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	1 - 114	3.6e-24	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	120
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	3 cut(s)	240, 249, 254
AluBI	AGCT	2 cut(s)	382, 413
AluI	AGCT	2 cut(s)	382, 413
Alw21I	GWGCWC	1 cut(s)	286
AoxI	GGCC	7 cut(s)	15, 54, 102, 137, 252, 354, 369
ApoI	RAATTY	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	211, 256, 306
AvaII	GGWCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 251, 285
BciT130I	CCWGG	3 cut(s)	242, 251, 256
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	2 cut(s)	387, 408
BfrI	CTTAAG	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	242, 251, 256
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmrFI	CCNGG	3 cut(s)	242, 251, 256
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	242, 251, 256
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	113, 392
BseRI	GAGGAG	1 cut(s)	365
BshFI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
Bsp1286I	GDGCHC	1 cut(s)	286
BspANI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
BspCNI	CTCAG	2 cut(s)	112, 391
BspQI	GCTCTTC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	268
Bst2UI	CCWGG	3 cut(s)	242, 251, 256
Bst4CI	ACNGT	2 cut(s)	135, 281
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	99, 378
BstF5I	GGATG	1 cut(s)	40
BstNI	CCWGG	3 cut(s)	242, 251, 256
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	240, 249, 254
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	257
CviAII	CATG	3 cut(s)	287, 307, 318
CviJI	RGCY	9 cut(s)	17, 56, 104, 139, 254, 356, 371, 382, 413
CviKI_1	RGCY	9 cut(s)	17, 56, 104, 139, 254, 356, 371, 382, 413
DdeI	CTNAG	2 cut(s)	99, 378
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	240, 249, 254
FaeI	CATG	3 cut(s)	290, 310, 321
FaiI	YATR	8 cut(s)	48, 230, 237, 277, 288, 308, 319, 324
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	286, 306, 317
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	2 cut(s)	387, 408
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	7 cut(s)	17, 56, 104, 139, 254, 356, 371
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	290, 310, 321
HinfI	GANTC	2 cut(s)	109, 218
HphI	GGTGA	3 cut(s)	211, 256, 306
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	29, 361
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	135, 281
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	99, 378
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	290, 310, 321
LguI	GCTCTTC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	387, 408
MboII	GAAGA	3 cut(s)	217, 303, 415
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	3 cut(s)	155, 294, 333
MnlI	CCTC	6 cut(s)	25, 190, 258, 343, 346, 361
MseI	TTAA	5 cut(s)	144, 174, 297, 332, 424
MslI	CAYNNNNRTG	2 cut(s)	120, 316
MspA1I	CMGCKG	1 cut(s)	382
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	242, 251, 256
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	3 cut(s)	242, 251, 256
NlaIII	CATG	3 cut(s)	290, 310, 321
NmeAIII	GCCGAG	1 cut(s)	208
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	76, 277
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	109, 218
PscI	ACATGT	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	297
Psp6I	CCWGG	3 cut(s)	240, 249, 254
PspGI	CCWGG	3 cut(s)	240, 249, 254
PspPI	GGNCC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	382
RseI	CAYNNNNRTG	2 cut(s)	120, 316
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	5 cut(s)	144, 174, 297, 332, 424
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	242, 251, 256
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	6 cut(s)	26, 201, 208, 246, 384, 415
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	120, 316
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	3 cut(s)	155, 294, 333
SspMI	CTAG	2 cut(s)	387, 408
StyD4I	CCNGG	3 cut(s)	240, 249, 254
TaaI	ACNGT	2 cut(s)	135, 281
TasI	AATT	3 cut(s)	155, 294, 333
TfiI	GAWTC	2 cut(s)	109, 218
Tru1I	TTAA	5 cut(s)	144, 174, 297, 332, 424
Tru9I	TTAA	5 cut(s)	144, 174, 297, 332, 424
TspDTI	ATGAA	2 cut(s)	148, 217
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 160
XspI	CTAG	2 cut(s)	387, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.