Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

6812695 .. 6815180

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGCCCAAAGCAGCCGAAGTGAGGGTGAAGTACTCAAGAGAGCCCGACAATATCACGAAGTCTTGCAAAGCAAGAGGCTCTGACCTGAGGGTTCATTTCAAGAACACGAGGGAAACTGCATTTGCTATCAGAAAGTTAACCTTGGTCAAGGCAAAGCGATATTTGGAGGATGTTCTGGCTCACAAGCAGGCCATTCCCTTCCGTCGTTTCTGCCGTGGTGTTGGGCGTACTGCCCAGGCAAAGAACAGGCATTCCAATGGGCAAGGACGCTGGCCTGTCAAGTCCGCCAAGTTCATATTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTTTGGATGTTGATACCCTGATTGTATCTCACATCCAGGTCAACCAAGCACAGAAGCAAAGGCGCCGAACCTACAGGGCTCACGGAAGAATCAACCCATATATGTCATCTCCCTGCCATATTGAGCTGATCCTGTCTGAGAAGGAAGAACCCGTTAAGAAAGAGCCTGGGAGCCAGTTGGCAACCAGCAAATCGAAGAAGGCTGCTCTCAGAAGTGGTGCTTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

191

Amino Acids

21.46

Weight (kDa)

10.48

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	25 - 160	5.3e-32	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	405
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	406
AfaI	GTAC	2 cut(s)	35, 232
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	237, 378, 508
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
AlwI	GGATC	1 cut(s)	466
AoxI	GGCC	2 cut(s)	192, 275
ApeKI	GCWGC	2 cut(s)	14, 545
AspLEI	GCGC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	40
AxyI	CCTNAGG	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	405
BanII	GRGCYC	2 cut(s)	48, 424
BauI	CACGAG	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	26, 532
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	3 cut(s)	239, 380, 510
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	409
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	15, 546
BlsI	GCNGC	2 cut(s)	16, 547
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	239, 380, 510
BmiI	GGNNCC	2 cut(s)	407, 515
BmrFI	CCNGG	3 cut(s)	239, 380, 510
BpuEI	CTTGAG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	4 cut(s)	144, 217, 237, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	517
Bse21I	CCTNAGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	3 cut(s)	239, 380, 510
BseDI	CCNNGG	4 cut(s)	144, 217, 237, 509
BseGI	GGATG	3 cut(s)	178, 355, 375
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	4 cut(s)	80, 312, 471, 565
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	26, 532
BshFI	GGCC	2 cut(s)	194, 277
BshNI	GGYRCC	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmI	GAATGC	2 cut(s)	253, 322
BsnI	GGCC	2 cut(s)	194, 277
Bsp1286I	GDGCHC	2 cut(s)	48, 424
Bsp143I	GATC	1 cut(s)	471
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	194, 277
BspCNI	CTCAG	4 cut(s)	81, 313, 472, 564
BspLI	GGNNCC	2 cut(s)	407, 515
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	405
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	144, 217, 237, 509
BssMI	GATC	1 cut(s)	471
BssNI	GRCGYC	1 cut(s)	406
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	3 cut(s)	239, 380, 510
BstACI	GRCGYC	1 cut(s)	406
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	192, 275
BstDEI	CTNAG	5 cut(s)	89, 321, 480, 551, 570
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	178, 355, 375
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	471
BstNI	CCWGG	3 cut(s)	239, 380, 510
BstSCI	CCNGG	3 cut(s)	237, 378, 508
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	26, 532
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	194, 277
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	178, 355, 375
Cac8I	GCNNGC	2 cut(s)	192, 275
CfoI	GCGC	1 cut(s)	408
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	34, 231
CviQI	GTAC	2 cut(s)	34, 231
DdeI	CTNAG	5 cut(s)	89, 321, 480, 551, 570
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	48, 424
Eco57I	CTGAAG	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	237, 378, 508
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	48, 424
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	144
FaiI	YATR	5 cut(s)	299, 442, 444, 446, 462
FalI	AAGNNNNNCTT	3 cut(s)	128, 160, 547
Fnu4HI	GCNGC	2 cut(s)	15, 546
FokI	GGATG	3 cut(s)	185, 362, 362
FriOI	GRGCYC	2 cut(s)	48, 424
Fsp4HI	GCNGC	2 cut(s)	15, 546
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	2 cut(s)	15, 546
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	2 cut(s)	194, 277
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	2 cut(s)	141, 385
HindII	GTYRAC	2 cut(s)	141, 385
HinfI	GANTC	1 cut(s)	432
HpaI	GTTAAC	1 cut(s)	141
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	141, 385
Hpy188I	TCNGA	4 cut(s)	85, 134, 481, 554
Hpy188III	TCNNGA	3 cut(s)	39, 58, 103
Hpy8I	GTNNAC	2 cut(s)	141, 385
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	4 cut(s)	211, 334, 478, 535
HpyCH4V	TGCA	2 cut(s)	69, 122
HpyF3I	CTNAG	5 cut(s)	89, 321, 480, 551, 570
Hsp92I	GRCGYC	1 cut(s)	406
HspAI	GCGC	1 cut(s)	406
KasI	GGCGCC	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	2 cut(s)	26, 532
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	3 cut(s)	441, 500, 550
MhlI	GDGCHC	2 cut(s)	48, 424
Mly113I	GGCGCC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	18, 71, 84, 105, 163
MseI	TTAA	3 cut(s)	140, 312, 498
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	239, 380, 510
Mva1269I	GAATGC	2 cut(s)	253, 322
MvaI	CCWGG	3 cut(s)	239, 380, 510
NarI	GGCGCC	1 cut(s)	406
NdeII	GATC	1 cut(s)	471
NlaIV	GGNNCC	2 cut(s)	407, 515
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PctI	GAATGC	2 cut(s)	253, 322
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	16, 547
PluTI	GGCGCC	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	237, 378, 508
PspGI	CCWGG	3 cut(s)	237, 378, 508
PspN4I	GGNNCC	2 cut(s)	407, 515
RsaI	GTAC	2 cut(s)	35, 232
RsaNI	GTAC	2 cut(s)	34, 231
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	140, 312, 498
SatI	GCNGC	2 cut(s)	15, 546
Sau3AI	GATC	1 cut(s)	471
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	239, 380, 510
SduI	GDGCHC	2 cut(s)	48, 424
SetI	ASST	5 cut(s)	90, 146, 384, 416, 471
SfcI	CTRYAG	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	37, 311
SmoI	CTYRAG	2 cut(s)	37, 311
SsiI	CCGC	1 cut(s)	288
SspDI	GGCGCC	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	237, 378, 508
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	536
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	3 cut(s)	140, 312, 498
Tru9I	TTAA	3 cut(s)	140, 312, 498
TseI	GCWGC	2 cut(s)	14, 545
TspDTI	ATGAA	3 cut(s)	17, 86, 286
TspGWI	ACGGA	2 cut(s)	194, 441
Vha464I	CTTAAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.