RLG00000008686

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001814
Physical Location & Seq
Forward (+)
35024375 .. 35024926
552 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008686

Sequence Viewer

Length: 513 bp
ATGGTGAAGTACTCCAAAGAGCCCGATAATCCCACCAAGTCTTGCAAAGCAAGGGGCTCTGACCTCAGAGTTCATTTCAAGAACACAAGGGAGACTGCGTTCTCAATCAGGAAGATGTCCTTGATTAAGGCAAAGCGATATCTGGACGATGTTTTGGTTCACAAGCAAGCCATTCCATTCAGACGTTTCTGCCGTGGTGTTGGGCGTACAGCTAAGGCCAAGAACAGGCATTCCAATGGCCGGGGACGCTGGCCTGTGAAATCTGCCAAGTTCATTTTGGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGTCAACCAAGCACAGAAGCAAAGACGCCGAACATACCGTGCTCATGGAAGAATCCACCCATACATGTCATCTCCATGCCACATTGAGCTTACCTTGTCTGAAAAGGAAGAACCAGTGAAGAAAGAGCCAGACTCCCAATTGGCAACCAGCAAATCCAGGAAGTCTCATGCTGTTTGCAGTGGTGGTTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048872 GO:0061484 GO:0065007 GO:0065008
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

171

Amino Acids

19.37

Weight (kDa)

10.47

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 17 - 138 1e-17 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 2 cut(s) 11, 208
AfiI CCNNNNNNNGG 2 cut(s) 225, 240
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 473
AloI GAACNNNNNNTCC 4 cut(s) 83, 115, 215, 247
AluBI AGCT 2 cut(s) 212, 406
AluI AGCT 2 cut(s) 212, 406
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 86, 486
AoxI GGCC 3 cut(s) 216, 238, 251
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 2 cut(s) 24, 59
Bbv12I GWGCWC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 475
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 86, 486
BfrI CTTAAG 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 242, 475
BmrFI CCNGG 2 cut(s) 242, 475
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 193, 241
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 240
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 193, 241
BseLI CCNNNNNNNGG 2 cut(s) 225, 240
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 79, 288
BseNI ACTGG 1 cut(s) 431
BshFI GGCC 3 cut(s) 218, 240, 253
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 225, 240
BsmAI GTCTC 2 cut(s) 86, 486
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 2 cut(s) 229, 298
BsnI GGCC 3 cut(s) 218, 240, 253
Bsp1286I GDGCHC 3 cut(s) 24, 59, 361
BspANI GGCC 3 cut(s) 218, 240, 253
BspCNI CTCAG 2 cut(s) 78, 289
BspTI CTTAAG 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 193, 241
BssNI GRCGYC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 475
Bst4CI ACNGT 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 343
BstAFI CTTAAG 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 168, 251
BstDEI CTNAG 3 cut(s) 65, 213, 297
BstDSI CCRYGG 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 86, 486
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 475
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 240, 473
BsuRI GGCC 3 cut(s) 218, 240, 253
BtgI CCRYGG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 2 cut(s) 438, 502
Cac8I GCNNGC 2 cut(s) 168, 251
CseI GACGC 2 cut(s) 255, 351
Csp6I GTAC 2 cut(s) 10, 207
CviAII CATG 4 cut(s) 362, 382, 393, 485
CviJI RGCY 9 cut(s) 22, 57, 170, 212, 218, 240, 253, 406, 445
CviKI_1 RGCY 9 cut(s) 22, 57, 170, 212, 218, 240, 253, 406, 445
CviQI GTAC 2 cut(s) 10, 207
DdeI CTNAG 3 cut(s) 65, 213, 297
EaeI YGGCCR 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 24, 59
Eco32I GATATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 473
EcoRV GATATC 1 cut(s) 140
EcoT38I GRGCYC 2 cut(s) 24, 59
FaeI CATG 4 cut(s) 365, 385, 396, 488
FaiI YATR 6 cut(s) 352, 363, 379, 383, 394, 486
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 258
FatI CATG 4 cut(s) 361, 381, 392, 484
FriOI GRGCYC 2 cut(s) 24, 59
HaeIII GGCC 3 cut(s) 218, 240, 253
HapII CCGG 1 cut(s) 241
HgaI GACGC 2 cut(s) 255, 351
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 4 cut(s) 365, 385, 396, 488
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 369, 449
HpaII CCGG 1 cut(s) 241
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 160, 322
Hpy188I TCNGA 4 cut(s) 61, 68, 182, 418
Hpy188III TCNNGA 3 cut(s) 79, 109, 143
Hpy8I GTNNAC 2 cut(s) 160, 322
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 45, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 3 cut(s) 65, 213, 297
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 4 cut(s) 365, 385, 396, 488
MaeII ACGT 1 cut(s) 184
MboII GAAGA 4 cut(s) 124, 378, 437, 448
MfeI CAATTG 1 cut(s) 455
MhlI GDGCHC 3 cut(s) 24, 59, 361
MluCI AATT 1 cut(s) 455
MlyI GAGTC 1 cut(s) 443
MnlI CCTC 1 cut(s) 74
MseI TTAA 2 cut(s) 126, 288
MslI CAYNNNNRTG 2 cut(s) 234, 391
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 2 cut(s) 242, 475
MunI CAATTG 1 cut(s) 455
Mva1269I GAATGC 2 cut(s) 229, 298
MvaI CCWGG 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 242
NlaIII CATG 4 cut(s) 365, 385, 396, 488
NspI RCATGY 1 cut(s) 385
PciI ACATGT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PctI GAATGC 2 cut(s) 229, 298
PfeI GAWTC 1 cut(s) 369
PfoI TCCNGGA 1 cut(s) 473
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PscI ACATGT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 473
PspGI CCWGG 1 cut(s) 473
RsaI GTAC 2 cut(s) 11, 208
RsaNI GTAC 2 cut(s) 10, 207
RseI CAYNNNNRTG 2 cut(s) 234, 391
SaqAI TTAA 2 cut(s) 126, 288
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 242, 475
SduI GDGCHC 3 cut(s) 24, 59, 361
SetI ASST 6 cut(s) 66, 187, 214, 321, 408, 413
SmiMI CAYNNNNRTG 2 cut(s) 234, 391
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 240, 473
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 187
TasI AATT 1 cut(s) 455
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 2 cut(s) 126, 288
Tru9I TTAA 2 cut(s) 126, 288
TscAI CASTG 2 cut(s) 438, 502
TspDTI ATGAA 2 cut(s) 62, 262
TspRI CASTG 2 cut(s) 438, 502
Vha464I CTTAAG 1 cut(s) 287
XceI RCATGY 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.