Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

6859520 .. 6862038

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGCCCAAAGAAGCCCAATTGAGGCACAAGTCCCACAAGAACTCGCCTCTTCTGCGTCTAAGCAAAAGCAAGCGTAAACCCTTCACTGAGGCAGAAGCTCCATCGGCCGCCATGGTGAAGTACTCCAGAGAGCCCGACAATATCACCAAGTCTTGCAAAGCAAGAGGTTCTGACCTGAGGGTTCATTTCAAGAACACAAGGGAAACTGCGTTTTCTATCAGAAAGATGCGCTTGGACAAGGCAAAGAGTTATTTGGAGGATGTTCTGGCTCACAAACAGGCCATTCCCTTCCGTCGTTTCTGCCGTGGAGTTGGGCGTACTGCCCAGGCAAAGAACAGGCATTCCAATGGGCAAGGACGCTGGCCTGTCAAGTCTGCCAAGTTCATATTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTTTGGATGTTGATTCCCTAATCGTATCTCACATCCAGGTCAACCAAGCACAGAAGCAAAGGCGCCGAACCTACAGGGCTCACGGAAGAATCAACCCCTACATGTCATCGCCCTGCCATATTGAGCTGATCCTTTCCGAGAAGGAAGAACCCGTCAAGAAAGAGCCCGAGAGCCAGTTGGCAACAAGCAAATCGAAGAAGGCTGCTCTTAGGAGCGGTGCTTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

221

Amino Acids

24.95

Weight (kDa)

10.43

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	495
AccBSI	CCGCTC	1 cut(s)	648
AciI	CCGC	2 cut(s)	111, 648
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	496
AfaI	GTAC	2 cut(s)	125, 322
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	327, 468
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	101, 559
AluI	AGCT	2 cut(s)	101, 559
AlwI	GGATC	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	108, 282, 365
ApeKI	GCWGC	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	234, 498
AsuHPI	GGTGA	2 cut(s)	130, 139
AvaI	CYCGRG	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	495
BanII	GRGCYC	3 cut(s)	138, 514, 600
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	329, 470
BfmI	CTRYAG	1 cut(s)	505
BfoI	RGCGCY	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	2 cut(s)	111, 636
BlsI	GCNGC	2 cut(s)	112, 637
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	329, 470
BmeT110I	CYCGRG	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	2 cut(s)	329, 470
BmsI	GCATC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	114, 307, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	607
Bse21I	CCTNAGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	329, 470
BseDI	CCNNGG	3 cut(s)	114, 307, 327
BseGI	GGATG	3 cut(s)	268, 445, 465
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	3 cut(s)	81, 170, 402
BseNI	ACTGG	1 cut(s)	607
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	622
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	110, 284, 367
BshNI	GGYRCC	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	599
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	2 cut(s)	343, 412
BsnI	GGCC	3 cut(s)	110, 284, 367
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	138, 514, 600
Bsp143I	GATC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	111, 648
BspANI	GGCC	3 cut(s)	110, 284, 367
BspCNI	CTCAG	3 cut(s)	82, 171, 403
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	3 cut(s)	114, 307, 327
BssMI	GATC	1 cut(s)	561
BssNI	GRCGYC	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	329, 470
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	496
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	74, 365
BstDEI	CTNAG	6 cut(s)	62, 90, 179, 411, 641, 660
BstDSI	CCRYGG	2 cut(s)	114, 307
BstF5I	GGATG	3 cut(s)	268, 445, 465
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	234, 498
BstKTI	GATC	1 cut(s)	564
BstMBI	GATC	1 cut(s)	561
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 107
BstNI	CCWGG	2 cut(s)	329, 470
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	327, 468
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	622
BstZI	CGGCCG	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	110, 284, 367
BtgI	CCRYGG	2 cut(s)	114, 307
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	268, 445, 465
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	74, 365
CfoI	GCGC	2 cut(s)	234, 498
CseI	GACGC	2 cut(s)	47, 369
Csp6I	GTAC	2 cut(s)	124, 321
CviAII	CATG	2 cut(s)	115, 535
CviQI	GTAC	2 cut(s)	124, 321
DdeI	CTNAG	6 cut(s)	62, 90, 179, 411, 641, 660
DinI	GGCGCC	1 cut(s)	497
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	3 cut(s)	138, 514, 600
Eco52I	CGGCCG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	327, 468
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	3 cut(s)	138, 514, 600
EgeI	GGCGCC	1 cut(s)	497
EheI	GGCGCC	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	118, 538
FaiI	YATR	4 cut(s)	116, 389, 536, 552
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	114, 534
Fnu4HI	GCNGC	2 cut(s)	111, 636
FokI	GGATG	3 cut(s)	275, 452, 452
FriOI	GRGCYC	3 cut(s)	138, 514, 600
Fsp4HI	GCNGC	2 cut(s)	111, 636
GlaI	GCGC	2 cut(s)	233, 497
GluI	GCNGC	2 cut(s)	111, 636
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	3 cut(s)	110, 284, 367
HgaI	GACGC	2 cut(s)	47, 369
HhaI	GCGC	2 cut(s)	234, 498
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	118, 538
Hin6I	GCGC	2 cut(s)	232, 496
HinP1I	GCGC	2 cut(s)	232, 496
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	446, 522
HphI	GGTGA	2 cut(s)	130, 139
Hpy166II	GTNNAC	2 cut(s)	80, 475
Hpy188I	TCNGA	3 cut(s)	175, 224, 571
Hpy188III	TCNNGA	3 cut(s)	129, 193, 589
Hpy8I	GTNNAC	2 cut(s)	80, 475
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	5 cut(s)	94, 301, 424, 568, 625
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 107
HpyF3I	CTNAG	6 cut(s)	62, 90, 179, 411, 641, 660
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	2 cut(s)	118, 538
HspAI	GCGC	2 cut(s)	232, 496
KasI	GGCGCC	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	106, 645
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	1 cut(s)	219
MalI	GATC	1 cut(s)	563
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	1 cut(s)	561
MboII	GAAGA	4 cut(s)	44, 531, 590, 640
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	3 cut(s)	138, 514, 600
MluCI	AATT	1 cut(s)	20
Mly113I	GGCGCC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	18, 60, 85, 161, 174, 253
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	329, 470
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	343, 412
MvaI	CCWGG	2 cut(s)	329, 470
MwoI	GCNNNNNNNGC	2 cut(s)	55, 107
NarI	GGCGCC	1 cut(s)	496
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	2 cut(s)	118, 538
NlaIV	GGNNCC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	538
PciI	ACATGT	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	2 cut(s)	343, 412
PfeI	GAWTC	2 cut(s)	446, 522
PkrI	GCNGC	2 cut(s)	112, 637
PluTI	GGCGCC	1 cut(s)	499
PscI	ACATGT	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	327, 468
PspGI	CCWGG	2 cut(s)	327, 468
PspN4I	GGNNCC	1 cut(s)	497
RsaI	GTAC	2 cut(s)	125, 322
RsaNI	GTAC	2 cut(s)	124, 321
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	111, 636
Sau3AI	GATC	1 cut(s)	561
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	329, 470
SduI	GDGCHC	3 cut(s)	138, 514, 600
SetI	ASST	6 cut(s)	103, 172, 180, 474, 506, 561
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	505
SfoI	GGCGCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	2 cut(s)	111, 648
SspDI	GGCGCC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	327, 468
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	626
TasI	AATT	1 cut(s)	20
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	446, 522
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	17, 176, 376
TspGWI	ACGGA	2 cut(s)	284, 531
TspRI	CASTG	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	401
XceI	RCATGY	1 cut(s)	538
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.