Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

26751242 .. 26753555

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G305300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTGAAGTACTCGAGGGAGCCTGATAATCCAACCAAGTCCTGCAAGGCCAGGGGCTCGGATCTAAGAGTTCATTTCAAGAACACGAGAGAGACAGCCCATGCCATCCGGAAAATGCAGTTGGGAAAGGCCAAAAGTTACTTGGAAGATGTTTTGGCTCACAAGCAAGCCATTCCCTTCCGCCGCTTTTGCCGTGGTGTTGGTCGTACTGCTCAGGCGAAGAACCGCCAGTCGAATGGTCAAGGACGCTGGCCGGTTAAGTCTGCTAATTTCATTCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAAGTGAAAGGGCTGGATGTGGATTCACTTTATGTCTCTCACATCCAGGTCAACCAGGCTCAGAAACAGAGACGCCGCACATATCGTGCTCATGGAAGAATAAATCCTTATATGTCATCTCCCTGCCATATCGAGTTGGTTTTGTCAGAGAAAGAAGAGCCAGTGAAGAAAGAGCCTGAAACTCAATTGGCTCCCAGGAAATCAAGGAAAGGCCAAGCACTACACAGCGGTGCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

184

Amino Acids

20.76

Weight (kDa)

10.26

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	5 cut(s)	181, 184, 226, 385, 537
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	11, 208
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	4 cut(s)	50, 354, 363, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AleI	CACNNNNGTG	1 cut(s)	537
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	3 cut(s)	86, 349, 373
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	4 cut(s)	48, 129, 251, 520
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	400
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	4 cut(s)	52, 356, 365, 505
BcoDI	GTCTC	3 cut(s)	86, 349, 373
BisI	GCNGC	2 cut(s)	184, 385
BlsI	GCNGC	2 cut(s)	185, 386
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	52, 356, 365, 505
BmeT110I	CYCGRG	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	21, 501
BmrFI	CCNGG	4 cut(s)	52, 356, 365, 505
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	51, 193, 503
BsaWI	WCCGGW	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	229, 470
Bse3DI	GCAATG	1 cut(s)	310
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	4 cut(s)	52, 356, 365, 505
BseDI	CCNNGG	3 cut(s)	51, 193, 503
BseGI	GGATG	3 cut(s)	105, 331, 351
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	3 cut(s)	227, 288, 383
BseNI	ACTGG	2 cut(s)	229, 470
BshFI	GGCC	4 cut(s)	50, 131, 253, 522
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	109, 254
BsmAI	GTCTC	3 cut(s)	86, 349, 373
BsmBI	CGTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	50, 131, 253, 522
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	59, 400
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	5 cut(s)	181, 184, 226, 385, 537
BspANI	GGCC	4 cut(s)	50, 131, 253, 522
BspCNI	CTCAG	3 cut(s)	226, 289, 382
BspEI	TCCGGA	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	21, 501
BspPI	GGATC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	229, 470
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	51, 193, 503
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	382
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	4 cut(s)	52, 356, 365, 505
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	168, 251
BstDEI	CTNAG	4 cut(s)	65, 213, 297, 369
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	105, 331, 351
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	3 cut(s)	86, 349, 373
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	4 cut(s)	52, 356, 365, 505
BstSCI	CCNGG	4 cut(s)	50, 354, 363, 503
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	4 cut(s)	50, 131, 253, 522
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	105, 331, 351
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	168, 251
Cfr10I	RCCGGY	1 cut(s)	253
CseI	GACGC	2 cut(s)	255, 390
Csp6I	GTAC	2 cut(s)	10, 207
CviAII	CATG	2 cut(s)	101, 401
CviQI	GTAC	2 cut(s)	10, 207
DdeI	CTNAG	4 cut(s)	65, 213, 297, 369
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	4 cut(s)	50, 354, 363, 503
EcoT38I	GRGCYC	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	2 cut(s)	104, 404
FaiI	YATR	7 cut(s)	102, 342, 391, 402, 420, 422, 438
FatI	CATG	2 cut(s)	100, 400
Fnu4HI	GCNGC	2 cut(s)	184, 385
FokI	GGATG	3 cut(s)	92, 338, 338
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	184, 385
GluI	GCNGC	2 cut(s)	184, 385
HaeIII	GGCC	4 cut(s)	50, 131, 253, 522
HapII	CCGG	2 cut(s)	109, 254
HgaI	GACGC	2 cut(s)	255, 390
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	104, 404
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	109, 254
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	61, 372, 457
Hpy188III	TCNNGA	5 cut(s)	79, 109, 278, 289, 549
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	45, 118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	4 cut(s)	65, 213, 297, 369
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	104, 404
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	19, 505
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	6 cut(s)	158, 232, 417, 476, 487, 537
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	59, 400
MluCI	AATT	2 cut(s)	268, 494
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	9
MroI	TCCGGA	1 cut(s)	108
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	537
MspI	CCGG	2 cut(s)	109, 254
MspR9I	CCNGG	4 cut(s)	52, 356, 365, 505
MunI	CAATTG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	4 cut(s)	52, 356, 365, 505
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	104, 404
NlaIV	GGNNCC	2 cut(s)	21, 501
OliI	CACNNNNGTG	1 cut(s)	537
PaeR7I	CTCGAG	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	185, 386
Psp6I	CCWGG	4 cut(s)	50, 354, 363, 503
PspGI	CCWGG	4 cut(s)	50, 354, 363, 503
PspN4I	GGNNCC	2 cut(s)	21, 501
PspXI	VCTCGAGB	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	11, 208
RsaNI	GTAC	2 cut(s)	10, 207
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	184, 385
Sau3AI	GATC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	52, 356, 365, 505
SduI	GDGCHC	2 cut(s)	59, 400
SetI	ASST	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	13, 287
SmoI	CTYRAG	2 cut(s)	13, 287
Sse9I	AATT	2 cut(s)	268, 494
SsiI	CCGC	5 cut(s)	181, 184, 226, 385, 537
StyD4I	CCNGG	4 cut(s)	50, 354, 363, 503
TaqI	TCGA	3 cut(s)	14, 233, 441
TasI	AATT	2 cut(s)	268, 494
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	186, 387
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	62, 262
TspRI	CASTG	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.