Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Forward (+)

638779 .. 640533

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTGAAGTACTCGAGGGAGCCCGATAATCCCACCAAGTCCTGCAAGGCCCAGGGCGAGGGTCTAAGAGTTCATTTCAAGAACACGAGAGAGACTGCCCATGCCATCAGGAAGATGCATTTGGCAAAGGCCAAAAGGTACTTGGAAGATGTTTTAGCCCACAAGCAAGCCATTCCCTTTCGCCGCTTTTGCCGCGGTGTTGGTCGAACTGCTCAGGCGAAGAACCGCCAGTCCAATGGTCAGGGACGTTGGCCGGTTAAGTCTGCTAATTTCATTCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTAAAAGGGCTTGATGTGGATTCGCTCTACGTCTCTCACATCCAGGTCAACCAGGCTCAGAAACAGAGGCGCCGCACGTATCGTGCTCATGGGAGAATAAATCCTTATATGTCATCTCCCTGCCATATCGAGTTGATTTTGTCAGAGAAAGAAGAGGCAGTAAAGAAAGAGGCCGAAACTCAGTTGGCTCCCAGGAAATCGAGGAAAGGTCAAGCACTGCAGAGCGGTGCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

184

Amino Acids

20.76

Weight (kDa)

10.26

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	537
AccII	CGCG	1 cut(s)	195
AciI	CCGC	6 cut(s)	184, 193, 195, 226, 385, 537
AcoI	YGGCCR	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	11, 140
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	4 cut(s)	51, 354, 363, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	86, 349
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	4 cut(s)	48, 129, 251, 483
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	4 cut(s)	53, 356, 365, 505
BcoDI	GTCTC	2 cut(s)	86, 349
BfmI	CTRYAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	385
BisI	GCNGC	3 cut(s)	184, 193, 385
BlsI	GCNGC	3 cut(s)	185, 194, 386
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	53, 356, 365, 505
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	21, 383, 501
BmrFI	CCNGG	4 cut(s)	53, 356, 365, 505
BmsI	GCATC	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	213, 309
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	4 cut(s)	51, 52, 193, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	53, 356, 365, 505
BseDI	CCNNGG	4 cut(s)	51, 52, 193, 503
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	5 cut(s)	227, 288, 300, 383, 506
BseNI	ACTGG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	4 cut(s)	50, 131, 253, 485
BshNI	GGYRCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	86, 349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	50, 131, 253, 485
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	24, 400
BspACI	CCGC	6 cut(s)	184, 193, 195, 226, 385, 537
BspANI	GGCC	4 cut(s)	50, 131, 253, 485
BspCNI	CTCAG	5 cut(s)	226, 289, 301, 382, 505
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	3 cut(s)	21, 383, 501
BspMAI	CTGCAG	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	4 cut(s)	51, 52, 193, 503
BssNI	GRCGYC	1 cut(s)	382
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	4 cut(s)	53, 356, 365, 505
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	382
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	6 cut(s)	65, 213, 297, 309, 369, 492
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	86, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 192
BstNI	CCWGG	4 cut(s)	53, 356, 365, 505
BstSCI	CCNGG	4 cut(s)	51, 354, 363, 503
BstSFI	CTRYAG	1 cut(s)	530
BstUI	CGCG	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	4 cut(s)	50, 131, 253, 485
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	351
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	10, 139
CviAII	CATG	2 cut(s)	101, 401
CviQI	GTAC	2 cut(s)	10, 139
DdeI	CTNAG	6 cut(s)	65, 213, 297, 309, 369, 492
DinI	GGCGCC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	4 cut(s)	51, 354, 363, 503
EcoT22I	ATGCAT	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	383
EheI	GGCGCC	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	2 cut(s)	104, 404
FaiI	YATR	5 cut(s)	102, 402, 420, 422, 438
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	2 cut(s)	100, 400
Fnu4HI	GCNGC	3 cut(s)	184, 193, 385
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	184, 193, 385
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	3 cut(s)	184, 193, 385
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	4 cut(s)	50, 131, 253, 485
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	104, 404
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	372, 457
Hpy188III	TCNNGA	5 cut(s)	79, 109, 278, 289, 549
Hpy8I	GTNNAC	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	247, 342, 389
HpyCH4V	TGCA	3 cut(s)	45, 118, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 192
HpyF3I	CTNAG	6 cut(s)	65, 213, 297, 309, 369, 492
HpySE526I	ACGT	3 cut(s)	247, 342, 389
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	104, 404
HspAI	GCGC	1 cut(s)	382
KasI	GGCGCC	1 cut(s)	381
KspI	CCGCGG	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	19, 505
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	3 cut(s)	247, 342, 389
MbiI	CCGCTC	1 cut(s)	537
MboII	GAAGA	5 cut(s)	124, 158, 232, 476, 537
MhlI	GDGCHC	2 cut(s)	24, 400
MluCI	AATT	1 cut(s)	268
Mly113I	GGCGCC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	9, 52, 304, 372, 460, 475, 507
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	4 cut(s)	53, 356, 365, 505
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	4 cut(s)	53, 356, 365, 505
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	189, 192
NarI	GGCGCC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	104, 404
NlaIV	GGNNCC	3 cut(s)	21, 383, 501
NsiI	ATGCAT	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	13
PasI	CCCWGGG	1 cut(s)	52
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	185, 194, 386
PluTI	GGCGCC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	390
Psp6I	CCWGG	4 cut(s)	51, 354, 363, 503
PspGI	CCWGG	4 cut(s)	51, 354, 363, 503
PspN4I	GGNNCC	3 cut(s)	21, 383, 501
PspPI	GGNCC	1 cut(s)	49
PspXI	VCTCGAGB	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	534
RsaI	GTAC	2 cut(s)	11, 140
RsaNI	GTAC	2 cut(s)	10, 139
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	184, 193, 385
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	53, 356, 365, 505
SduI	GDGCHC	2 cut(s)	24, 400
SetI	ASST	7 cut(s)	140, 250, 315, 345, 360, 392, 523
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	530
SfoI	GGCGCC	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	13
SmlI	CTYRAG	2 cut(s)	13, 287
SmoI	CTYRAG	2 cut(s)	13, 287
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	6 cut(s)	184, 193, 195, 226, 385, 537
SspDI	GGCGCC	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	51, 354, 363, 503
TaiI	ACGT	3 cut(s)	250, 345, 392
TaqI	TCGA	4 cut(s)	14, 205, 441, 512
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	3 cut(s)	186, 195, 387
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	534
TspDTI	ATGAA	2 cut(s)	62, 262
TspRI	CASTG	1 cut(s)	534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.