Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000131.1

Orthogroup ID

OG0001814

Physical Location & Seq

Genomic Coordinates Reverse (-)

92899 .. 94609

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000131.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggtgaagtactccaaagagcccgataatcccaccaagtcttgcaaagcaaggggctctgacctcagagttcatttcaagaacacaagggagactgcgttctcaatcaggaagatgtccttgattaaggcaaagcgatatctggaggatgttttggttcacaagcaagccattccattcagacgtttctgccgtggtgttgggcgtacagctcaggccaagaacaggcattccaatggccagggacgctggcctgtgaaatctgccaagttcattttggatttgcttaagaatgctgagagcaatgctgaagtgaagggtttggatgttgactctcttgttgtatctcacatccaagtcaaccaagcacagaagcaaagacgccgaacataccgtgctcatggaagaatcaacccatacatgtcatctccatgccacattgagctcaccttgtctgaaaaggaagaaccagtgaagaaagagccagactcccaattggcaaccagcaaatccaggaagtctcaagctgttcgcagtggtggttctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048872 GO:0061484 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

183

Amino Acids

20.74

Weight (kDa)

10.36

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27400 AT1G67430
fragaria_vesca	FvH4_4g23920 FvH4_5g08150
malus_domestica	MD09G1011700.v1.1 MD13G1117300.v1.1 MD17G1012400.v1.1
prunus_persica	Prupe.1G228200_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.3G305300_v2.0.a1 Prupe.5G152400_v2.0.a1
pyrus_communis	pycom111g01000 pycom13g10160 pycom16g10090 pycom17g00990
rosa_chinensis	RchiOBHm_Chr2g0175461 RchiOBHm_Chr4g0430581 RchiOBHm_Chr7g0190361
rosa_laevigata	RLG00000004538 RLG00000008686 RLG00000022329
rosa_multiflora	Rmu_co8488531.1_g000001 Rmu_sc0000131.1_g000021 Rmu_sc0003512.1_g000017 Rmu_sc0011782.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264690 Rroxscaffold_4G00295410 Rroxscaffold_5G00372330
rosa_rugosa	Rorug02G0584600 Rorug04G0244400 Rorug04G0244500 Rorug04G0244600 Rorug06G0504100
rosa_samantha	Rh2AG664400 Rh2BG675100 Rh2CG638200 Rh2DG689100 Rh4AG300300 Rh4BG307400 Rh4CG324300 Rh4DG304700 Rh7AG109900 Rh7BG112500 Rh7DG112900
rosa_wichuraiana	Rw2G054450 Rw4G026060 Rw7G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	11, 208
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	240, 512
AloI	GAACNNNNNNTCC	4 cut(s)	83, 115, 215, 247
AluBI	AGCT	3 cut(s)	212, 445, 527
AluI	AGCT	3 cut(s)	212, 445, 527
Alw21I	GWGCWC	2 cut(s)	400, 447
Alw26I	GTCTC	2 cut(s)	86, 525
AoxI	GGCC	3 cut(s)	216, 238, 251
AsuHPI	GGTGA	2 cut(s)	16, 439
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	3 cut(s)	24, 59, 447
Bbv12I	GWGCWC	2 cut(s)	400, 447
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	242, 514
BcoDI	GTCTC	2 cut(s)	86, 525
BfrI	CTTAAG	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	242, 514
BmrFI	CCNGG	2 cut(s)	242, 514
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	193, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	242, 514
BseDI	CCNNGG	2 cut(s)	193, 241
BseGI	GGATG	3 cut(s)	154, 331, 351
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	3 cut(s)	79, 227, 288
BseNI	ACTGG	1 cut(s)	470
BshFI	GGCC	3 cut(s)	218, 240, 253
BsiHKAI	GWGCWC	2 cut(s)	400, 447
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	86, 525
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	2 cut(s)	229, 298
BsnI	GGCC	3 cut(s)	218, 240, 253
Bsp1286I	GDGCHC	4 cut(s)	24, 59, 400, 447
BspANI	GGCC	3 cut(s)	218, 240, 253
BspCNI	CTCAG	3 cut(s)	78, 226, 289
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	193, 241
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	242, 514
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	168, 251
BstDEI	CTNAG	3 cut(s)	65, 213, 297
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	154, 331, 351
BstMAI	GTCTC	2 cut(s)	86, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	2 cut(s)	242, 514
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	240, 512
BsuRI	GGCC	3 cut(s)	218, 240, 253
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	154, 331, 351
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	477, 541
Cac8I	GCNNGC	2 cut(s)	168, 251
CseI	GACGC	2 cut(s)	255, 390
Csp6I	GTAC	2 cut(s)	10, 207
CviAII	CATG	3 cut(s)	401, 421, 432
CviQI	GTAC	2 cut(s)	10, 207
DdeI	CTNAG	3 cut(s)	65, 213, 297
EaeI	YGGCCR	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	3 cut(s)	24, 59, 447
Eco32I	GATATC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	240, 512
EcoRV	GATATC	1 cut(s)	140
EcoT38I	GRGCYC	3 cut(s)	24, 59, 447
FaeI	CATG	3 cut(s)	404, 424, 435
FaiI	YATR	5 cut(s)	391, 402, 418, 422, 433
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	3 cut(s)	400, 420, 431
FokI	GGATG	3 cut(s)	161, 338, 338
FriOI	GRGCYC	3 cut(s)	24, 59, 447
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	218, 240, 253
HgaI	GACGC	2 cut(s)	255, 390
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	404, 424, 435
HincII	GTYRAC	2 cut(s)	331, 361
HindII	GTYRAC	2 cut(s)	331, 361
HinfI	GANTC	3 cut(s)	332, 408, 488
HphI	GGTGA	2 cut(s)	16, 439
Hpy166II	GTNNAC	3 cut(s)	160, 331, 361
Hpy188I	TCNGA	4 cut(s)	61, 68, 182, 457
Hpy188III	TCNNGA	3 cut(s)	79, 109, 143
Hpy8I	GTNNAC	3 cut(s)	160, 331, 361
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	65, 213, 297
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	404, 424, 435
MaeII	ACGT	1 cut(s)	184
MboII	GAAGA	4 cut(s)	124, 417, 476, 487
MfeI	CAATTG	1 cut(s)	494
MhlI	GDGCHC	4 cut(s)	24, 59, 400, 447
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	1 cut(s)	494
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	326, 482
MnlI	CCTC	2 cut(s)	74, 139
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	126, 288
MslI	CAYNNNNRTG	2 cut(s)	234, 430
Msp20I	TGGCCA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	242, 514
MunI	CAATTG	1 cut(s)	494
Mva1269I	GAATGC	2 cut(s)	229, 298
MvaI	CCWGG	2 cut(s)	242, 514
MwoI	GCNNNNNNNGC	1 cut(s)	246
NlaIII	CATG	3 cut(s)	404, 424, 435
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	2 cut(s)	229, 298
PfeI	GAWTC	1 cut(s)	408
PfoI	TCCNGGA	1 cut(s)	512
PleI	GAGTC	2 cut(s)	326, 482
PpsI	GAGTC	2 cut(s)	326, 482
PscI	ACATGT	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	240, 512
PspGI	CCWGG	2 cut(s)	240, 512
RsaI	GTAC	2 cut(s)	11, 208
RsaNI	GTAC	2 cut(s)	10, 207
RseI	CAYNNNNRTG	2 cut(s)	234, 430
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	126, 288
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	2 cut(s)	326, 482
ScrFI	CCNGG	2 cut(s)	242, 514
SduI	GDGCHC	4 cut(s)	24, 59, 400, 447
SetI	ASST	6 cut(s)	66, 187, 214, 447, 452, 529
SmiMI	CAYNNNNRTG	2 cut(s)	234, 430
SmlI	CTYRAG	2 cut(s)	287, 522
SmoI	CTYRAG	2 cut(s)	287, 522
Sse9I	AATT	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	240, 512
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	187
TasI	AATT	1 cut(s)	494
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	2 cut(s)	126, 288
Tru9I	TTAA	2 cut(s)	126, 288
TscAI	CASTG	2 cut(s)	477, 541
TspDTI	ATGAA	2 cut(s)	62, 262
TspRI	CASTG	2 cut(s)	477, 541
Vha464I	CTTAAG	1 cut(s)	287
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.