Rorug04G0244500

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001814
Physical Location & Seq
Forward (+)
41424245 .. 41426368
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0244500.1

Sequence Viewer

Length: 321 bp
ATGCCCGCAGCCGAGACCACCGACTCTGATCGGCAAAACGATGCTGTCTTAGACGATGCGACGCAGCTGCGCTCCGTAGCTTCTGTTTCTCGGTCTCCGGCGCTGCCGTGGGAGAGCGACTGTGAGGATCAGGTCAAGGAGGGGATCGTTAGGTTTTCGACCGATGGCGGGAGTGGCAAGAAGAAGAAAAAGACAAGGTTTTGGTTGAAGAAGAATGGAGTAGTTAATAATGTTACTAAGAACTTGGGTGATGATTCCATCTTAAAGGCCTTGAGGAGTTCGTCTCCTTTGGATAAATCGACTCCTTTTGGGCTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048872 GO:0061484 GO:0065007 GO:0065008
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

106

Amino Acids

11.52

Weight (kDa)

8.79

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 6, 168
AclWI GGATC 2 cut(s) 135, 152
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 67, 80
AluI AGCT 2 cut(s) 67, 80
Alw26I GTCTC 3 cut(s) 8, 99, 288
AlwI GGATC 2 cut(s) 135, 152
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 4 cut(s) 8, 64, 67, 103
AspLEI GCGC 2 cut(s) 72, 103
AsuHPI GGTGA 1 cut(s) 260
BbvI GCAGC 4 cut(s) 20, 54, 76, 90
BccI CCATC 2 cut(s) 158, 266
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BcoDI GTCTC 3 cut(s) 8, 99, 288
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 4 cut(s) 9, 65, 68, 104
BlsI GCNGC 4 cut(s) 10, 66, 69, 105
BmsI GCATC 2 cut(s) 31, 46
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpuEI CTTGAG 1 cut(s) 292
BsaI GGTCTC 2 cut(s) 8, 99
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 4 cut(s) 20, 54, 76, 90
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 3 cut(s) 8, 99, 288
BsmBI CGTCTC 1 cut(s) 288
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 2 cut(s) 8, 99
Bsp143I GATC 3 cut(s) 28, 127, 144
BspACI CCGC 2 cut(s) 6, 168
BspANI GGCC 1 cut(s) 269
BspPI GGATC 2 cut(s) 135, 152
BspTNI GGTCTC 2 cut(s) 8, 99
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 3 cut(s) 28, 127, 144
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 49, 237
BstDSI CCRYGG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 2 cut(s) 72, 103
BstKTI GATC 3 cut(s) 31, 130, 147
BstMAI GTCTC 3 cut(s) 8, 99, 288
BstMBI GATC 3 cut(s) 28, 127, 144
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstV1I GCAGC 4 cut(s) 20, 54, 76, 90
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 72, 103
CseI GACGC 1 cut(s) 70
CviJI RGCY 5 cut(s) 11, 67, 80, 269, 313
CviKI_1 RGCY 5 cut(s) 11, 67, 80, 269, 313
DdeI CTNAG 2 cut(s) 49, 237
DpnI GATC 3 cut(s) 30, 129, 146
DpnII GATC 3 cut(s) 28, 127, 144
Eco147I AGGCCT 1 cut(s) 269
Eco31I GGTCTC 2 cut(s) 8, 99
Esp3I CGTCTC 1 cut(s) 288
FauI CCCGC 2 cut(s) 13, 161
Fnu4HI GCNGC 4 cut(s) 9, 65, 68, 104
Fsp4HI GCNGC 4 cut(s) 9, 65, 68, 104
GlaI GCGC 2 cut(s) 71, 102
GluI GCNGC 4 cut(s) 9, 65, 68, 104
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 72, 103
Hin6I GCGC 2 cut(s) 70, 101
HinP1I GCGC 2 cut(s) 70, 101
HinfI GANTC 3 cut(s) 23, 254, 301
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 49, 237
HspAI GCGC 2 cut(s) 70, 101
Kzo9I GATC 3 cut(s) 28, 127, 144
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 2 cut(s) 111, 116
Lsp1109I GCAGC 4 cut(s) 20, 54, 76, 90
LweI GCATC 2 cut(s) 31, 46
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 30, 129, 146
MboI GATC 3 cut(s) 28, 127, 144
MboII GAAGA 4 cut(s) 193, 196, 220, 223
MluCI AATT 1 cut(s) 316
MlyI GAGTC 2 cut(s) 17, 295
MnlI CCTC 3 cut(s) 118, 133, 267
MseI TTAA 3 cut(s) 225, 263, 319
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 3 cut(s) 28, 127, 144
NmeAIII GCCGAG 1 cut(s) 37
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 4 cut(s) 10, 66, 69, 105
PleI GAGTC 2 cut(s) 17, 295
PpsI GAGTC 2 cut(s) 17, 295
PvuII CAGCTG 1 cut(s) 67
SaqAI TTAA 3 cut(s) 225, 263, 319
SatI GCNGC 4 cut(s) 9, 65, 68, 104
Sau3AI GATC 3 cut(s) 28, 127, 144
SchI GAGTC 2 cut(s) 17, 295
SetI ASST 5 cut(s) 69, 82, 135, 155, 200
SfaNI GCATC 2 cut(s) 31, 46
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 1 cut(s) 316
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 2 cut(s) 6, 168
StuI AGGCCT 1 cut(s) 269
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 158, 299
TaqII GACCGA 2 cut(s) 81, 176
TasI AATT 1 cut(s) 316
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 3 cut(s) 225, 263, 319
Tru9I TTAA 3 cut(s) 225, 263, 319
TseI GCWGC 4 cut(s) 8, 64, 67, 103
TspGWI ACGGA 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.