Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

12932024 .. 12934656

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTCAAGCTACCAGCACGGGGGCTCAGATTATGCATGCGGCGTTTCCCCGTTCTTGGAGGCGAGGGCATGTCCTGCCTCTCCGGAGTGCAAAAATCTTCAAGCCCCTCGCATGTCTCGAACTCAGAGGAAGCACAGGAATTGGTGGGTTCCATGAGATTGAACTTAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATCCCGTTCTGGTGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCCTTGCACCTTTACGTAGTGGATGTAGGTTTGTGGTGAAAACGAGGATATCGGGGATATCTTTGGTGCGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGGCTGTGTGGCTTGACAACAAGTACCGGCCTACTCGTGTCCCATCTCATGTACGCTCATATTTTGGTCACTTCCAGTGTCAACACTTGGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

188

Amino Acids

21.32

Weight (kDa)

9.47

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	58 - 176	1.1e-15	Thioesterase-like superfamily
4HBT	PF03061	66 - 149	1.6e-09	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	244
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	494, 522
AfiI	CCNNNNNNNGG	2 cut(s)	21, 57
AgsI	TTSAA	4 cut(s)	8, 103, 164, 416
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	248, 504
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	486
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	152, 304
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 57
Bse118I	RCCGGY	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	21, 57
BseMII	CTCAG	3 cut(s)	41, 139, 309
BseNI	ACTGG	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	85, 496
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	21, 57
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	3 cut(s)	40, 138, 310
BspEI	TCCGGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	152, 304
BspPI	GGATC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	190
BssSI	CACGAG	2 cut(s)	248, 504
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	2 cut(s)	248, 504
Bst4CI	ACNGT	3 cut(s)	242, 278, 420
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	27, 125, 318
BstF5I	GGATG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 221
BstNSI	RCATGY	3 cut(s)	41, 74, 117
BstSNI	TACGTA	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	493, 521
CviAII	CATG	5 cut(s)	38, 71, 114, 155, 518
CviJI	RGCY	8 cut(s)	11, 26, 106, 305, 448, 473, 481, 499
CviKI_1	RGCY	8 cut(s)	11, 26, 106, 305, 448, 473, 481, 499
CviQI	GTAC	2 cut(s)	493, 521
DdeI	CTNAG	3 cut(s)	27, 125, 318
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	430
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	28
Eco32I	GATATC	2 cut(s)	384, 393
EcoRV	GATATC	2 cut(s)	384, 393
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	5 cut(s)	41, 74, 117, 158, 521
FaiI	YATR	9 cut(s)	35, 39, 72, 115, 156, 183, 257, 519, 529
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	5 cut(s)	37, 70, 113, 154, 517
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	42
FspAI	RTGCGCAY	1 cut(s)	404
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	2 cut(s)	85, 496
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	5 cut(s)	41, 74, 117, 158, 521
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	3 cut(s)	245, 324, 551
HindII	GTYRAC	3 cut(s)	245, 324, 551
HpaI	GTTAAC	1 cut(s)	324
HpaII	CCGG	2 cut(s)	85, 496
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	5 cut(s)	208, 220, 245, 324, 551
Hpy188I	TCNGA	2 cut(s)	30, 128
Hpy188III	TCNNGA	5 cut(s)	85, 119, 176, 317, 443
Hpy8I	GTNNAC	5 cut(s)	208, 220, 245, 324, 551
HpyCH4III	ACNGT	3 cut(s)	242, 278, 420
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	37, 92, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 221
HpyF3I	CTNAG	3 cut(s)	27, 125, 318
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	5 cut(s)	41, 74, 117, 158, 521
HspAI	GCGC	1 cut(s)	403
Kpn2I	TCCGGA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	8 cut(s)	28, 89, 98, 123, 282, 330, 509, 557
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	141, 185, 312
MnlI	CCTC	7 cut(s)	54, 59, 90, 119, 122, 372, 451
Mph1103I	ATGCAT	1 cut(s)	39
MroI	TCCGGA	1 cut(s)	84
MseI	TTAA	3 cut(s)	168, 323, 429
MspI	CCGG	2 cut(s)	85, 496
MwoI	GCNNNNNNNGC	2 cut(s)	76, 221
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	5 cut(s)	41, 74, 117, 158, 521
NlaIV	GGNNCC	2 cut(s)	152, 304
NmuCI	GTSAC	1 cut(s)	536
NsbI	TGCGCA	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	3 cut(s)	41, 74, 117
PaeI	GCATGC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 246
PkrI	GCNGC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	152, 304
RsaI	GTAC	2 cut(s)	494, 522
RsaNI	GTAC	2 cut(s)	493, 521
SalI	GTCGAC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	168, 323, 429
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	4 cut(s)	13, 346, 352, 365
SnaBI	TACGTA	1 cut(s)	350
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	141, 185, 312
SsiI	CCGC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	242, 278, 420
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	120, 244, 561
TasI	AATT	3 cut(s)	141, 185, 312
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	168, 323, 429
Tru9I	TTAA	3 cut(s)	168, 323, 429
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	198, 297, 412
TspRI	CASTG	1 cut(s)	551
XceI	RCATGY	3 cut(s)	41, 74, 117
XmiI	GTMKAC	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.