Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

49558031 .. 49559071

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCTGCAAGTGATCATAAAGTTCAATATGTAATAAAAAAAGGCTTTCTCCATTCTGAACCTTGCAGAAGGAGTGGTTTTTATGATGTTGAGCTTAAAGTCCGAGAATATGAGCTTGATCGGTATGGCGTGGTTAACAATGCTGTCTATGTAGATTATTGCCAGCACGCTTTTGATGAACATTTAGAAAGCGTCGGCCTGAGTGCTGATGCAATTACCCAAACCGGTGAAGCAATGGCTTTGTCAGCATCGTCTCTGAAATTCATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGTTGCGGATGACTAACTCCTCAGCCGCTCGCCTGTATCTTGAGCAATTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTCGAAGGAACGGCCACAGTTGTGTGGCTTAATAAAGACTATCGCCCTGTCCGTATTCCATCGGAGTTTATATCTCAATTTGTCCAGTTTCATCGCCATAAGGAGTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

164

Amino Acids

18.79

Weight (kDa)

7.01

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	34 - 153	4.7e-17	Thioesterase-like superfamily
4HBT	PF03061	42 - 123	2.5e-08	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	2 cut(s)	307, 327
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	260
AgeI	ACCGGT	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	26, 358
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	4 cut(s)	94, 115, 361, 492
AluI	AGCT	4 cut(s)	94, 115, 361, 492
Alw26I	GTCTC	2 cut(s)	258, 279
AoxI	GGCC	2 cut(s)	196, 393
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	260
AsiGI	ACCGGT	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	258, 279
BfaI	CTAG	2 cut(s)	371, 489
BisI	GCNGC	2 cut(s)	327, 362
BlsI	GCNGC	2 cut(s)	328, 363
BmsI	GCATC	2 cut(s)	199, 257
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	240, 264
BseGI	GGATG	1 cut(s)	315
BseMI	GCAATG	2 cut(s)	240, 264
BseMII	CTCAG	2 cut(s)	191, 336
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	198, 395
BshTI	ACCGGT	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	258, 279
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	198, 395
Bsp119I	TTCGAA	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	13, 118
BspACI	CCGC	2 cut(s)	307, 327
BspANI	GGCC	2 cut(s)	198, 395
BspCNI	CTCAG	2 cut(s)	192, 335
BspT104I	TTCGAA	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	329
BsrDI	GCAATG	2 cut(s)	240, 264
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	2 cut(s)	13, 118
Bst4CI	ACNGT	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	164, 168, 331
BstDEI	CTNAG	2 cut(s)	200, 322
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	16, 121
BstMAI	GTCTC	2 cut(s)	258, 279
BstMBI	GATC	2 cut(s)	13, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	198, 395
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	164, 168, 331
Cfr10I	RCCGGY	1 cut(s)	224
CseI	GACGC	1 cut(s)	181
CspAI	ACCGGT	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	200, 322
DpnI	GATC	2 cut(s)	15, 120
DpnII	GATC	2 cut(s)	13, 118
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	258
FaiI	YATR	9 cut(s)	18, 30, 84, 111, 126, 150, 299, 452, 480
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	327, 362
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	327, 362
FspBI	CTAG	2 cut(s)	371, 489
GluI	GCNGC	2 cut(s)	327, 362
HaeIII	GGCC	2 cut(s)	198, 395
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	485
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	58, 104, 258, 445
Hpy188III	TCNNGA	2 cut(s)	341, 371
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	63, 380
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	4 cut(s)	8, 66, 212, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	200, 322
Ksp22I	TGATCA	1 cut(s)	13
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	13, 118
LpnPI	CCDG	6 cut(s)	176, 212, 238, 347, 441, 479
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	2 cut(s)	199, 257
MaeI	CTAG	2 cut(s)	371, 489
MalI	GATC	2 cut(s)	15, 120
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	2 cut(s)	13, 118
MboII	GAAGA	1 cut(s)	373
MluCI	AATT	4 cut(s)	213, 260, 347, 458
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	2 cut(s)	282, 331
MseI	TTAA	3 cut(s)	96, 135, 411
MslI	CAYNNNNRTG	1 cut(s)	401
MspI	CCGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	13, 118
NspV	TTCGAA	1 cut(s)	384
OliI	CACNNNNGTG	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	328, 363
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	3 cut(s)	96, 135, 411
SatI	GCNGC	2 cut(s)	327, 362
Sau3AI	GATC	2 cut(s)	13, 118
SchI	GAGTC	1 cut(s)	494
SetI	ASST	6 cut(s)	64, 96, 117, 274, 363, 494
SfaNI	GCATC	2 cut(s)	199, 257
SfuI	TTCGAA	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	213, 260, 347, 458
SsiI	CCGC	2 cut(s)	307, 327
SspMI	CTAG	2 cut(s)	371, 489
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	384
TasI	AATT	4 cut(s)	213, 260, 347, 458
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	96, 135, 411
Tru9I	TTAA	3 cut(s)	96, 135, 411
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	192, 253, 340, 461
TspGWI	ACGGA	1 cut(s)	422
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	370
XspI	CTAG	2 cut(s)	371, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.