Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

25592286 .. 25593640

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATTCGGGTTACCGGCACGGCGGCTCCGGCTATGTCTGTGGTGTTTCCGACTTCATGGAGACAACCGGTTATGCTTCCTCTCCGGAGCGCAAAGACCTTCAAGCCTCACACATTTCTTGATCTTAAAGGAGGCAAAGAGTACAGTACAAAAATGAGTGAGTTCCATGAGGTTGAGCTTAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACACGGCATGCACGAATTTCTAGAGAGTATTGGTATCAACTGTGATGAAGTTGCCCGTTCTGGTGAAGCCTTAGCAATATCAGAGTTGACAATGAATTTCCTTGCACCTTTACGTAGCGGAGACAAGTTTGTAGTGAAAGTGAACATATCTAGAACATCTGCTGCGCGTATTTACTTCGATCATTCCATCTTGAAACTTCCAAATCAAGAGGTTATATTGGAGGCGAAAGCAACAGTTGTATGGCTTGACAACAAGCACCGTCCTGTTCGTATCCCATCTTCGATACGCTCTAAATTTGTTCACTTCCTACGCCAAAACGACACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

192

Amino Acids

21.8

Weight (kDa)

9.1

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	62 - 182	1.2e-18	Thioesterase-like superfamily
4HBT	PF03061	70 - 153	9.9e-13	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	2 cut(s)	23, 366
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	263, 343, 542
AfaI	GTAC	2 cut(s)	143, 148
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	103, 442
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	55, 363
AlwI	GGATC	1 cut(s)	210
Aor13HI	TCCGGA	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	3 cut(s)	263, 343, 542
AsiGI	ACCGGT	1 cut(s)	67
AspLEI	GCGC	2 cut(s)	92, 415
AsuHPI	GGTGA	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	443, 532
BceAI	ACGGC	2 cut(s)	36, 268
BciVI	GTATCC	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	55, 363
BfaI	CTAG	2 cut(s)	269, 399
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	24, 411
BlsI	GCNGC	2 cut(s)	25, 412
BmiI	GGNNCC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	362
BsaWI	WCCGGW	2 cut(s)	67, 84
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse118I	RCCGGY	2 cut(s)	14, 67
BseAI	TCCGGA	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	415
BshTI	ACCGGT	1 cut(s)	67
BsiSI	CCGG	4 cut(s)	15, 29, 68, 85
BsmAI	GTCTC	2 cut(s)	55, 363
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	121, 202, 427
BspACI	CCGC	2 cut(s)	23, 366
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	14, 67
BssAI	RCCGGY	2 cut(s)	14, 67
BssMI	GATC	3 cut(s)	121, 202, 427
Bst4CI	ACNGT	5 cut(s)	146, 290, 484, 509, 574
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	319
BstEII	GGTNACC	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	92, 415
BstKTI	GATC	3 cut(s)	124, 205, 430
BstMAI	GTCTC	2 cut(s)	55, 363
BstMBI	GATC	3 cut(s)	121, 202, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 233, 252
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	10
BstSNI	TACGTA	1 cut(s)	362
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	257
CfoI	GCGC	2 cut(s)	92, 415
Cfr10I	RCCGGY	2 cut(s)	14, 67
Csp6I	GTAC	2 cut(s)	142, 147
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	3 cut(s)	57, 167, 256
CviJI	RGCY	6 cut(s)	26, 32, 106, 178, 317, 493
CviKI_1	RGCY	6 cut(s)	26, 32, 106, 178, 317, 493
CviQI	GTAC	2 cut(s)	142, 147
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	3 cut(s)	123, 204, 429
DpnII	GATC	3 cut(s)	121, 202, 427
Eco105I	TACGTA	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
FaeI	CATG	3 cut(s)	60, 170, 259
FaiI	YATR	9 cut(s)	35, 58, 74, 168, 195, 257, 395, 464, 490
FatI	CATG	3 cut(s)	56, 166, 255
Fnu4HI	GCNGC	2 cut(s)	24, 411
Fsp4HI	GCNGC	2 cut(s)	24, 411
FspBI	CTAG	2 cut(s)	269, 399
GlaI	GCGC	2 cut(s)	91, 414
GluI	GCNGC	2 cut(s)	24, 411
HapII	CCGG	4 cut(s)	15, 29, 68, 85
HhaI	GCGC	2 cut(s)	92, 415
Hin1II	CATG	3 cut(s)	60, 170, 259
Hin6I	GCGC	2 cut(s)	90, 413
HinP1I	GCGC	2 cut(s)	90, 413
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	4 cut(s)	15, 29, 68, 85
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	5 cut(s)	220, 232, 336, 391, 550
Hpy188I	TCNGA	2 cut(s)	51, 331
Hpy188III	TCNNGA	7 cut(s)	85, 119, 188, 269, 399, 439, 455
Hpy8I	GTNNAC	5 cut(s)	220, 232, 336, 391, 550
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	5 cut(s)	146, 290, 484, 509, 574
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	259, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 233, 252
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	3 cut(s)	60, 170, 259
HspAI	GCGC	2 cut(s)	90, 413
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	121, 202, 427
LmnI	GCTCC	2 cut(s)	31, 87
LpnPI	CCDG	6 cut(s)	28, 42, 81, 98, 294, 525
Lsp1109I	GCAGC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	269, 399
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	123, 204, 429
MboI	GATC	3 cut(s)	121, 202, 427
MboII	GAAGA	1 cut(s)	519
MluCI	AATT	4 cut(s)	197, 263, 343, 542
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	90, 117, 125, 163, 451, 463
MroI	TCCGGA	1 cut(s)	84
MseI	TTAA	2 cut(s)	126, 180
MspI	CCGG	4 cut(s)	15, 29, 68, 85
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	29, 233, 252
NdeII	GATC	3 cut(s)	121, 202, 427
NlaIII	CATG	3 cut(s)	60, 170, 259
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	4
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	25, 412
Ppu21I	YACGTR	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	27
RsaI	GTAC	2 cut(s)	143, 148
RsaNI	GTAC	2 cut(s)	142, 147
SaqAI	TTAA	2 cut(s)	126, 180
SatI	GCNGC	2 cut(s)	24, 411
Sau3AI	GATC	3 cut(s)	121, 202, 427
SetI	ASST	6 cut(s)	101, 174, 180, 358, 364, 462
SnaBI	TACGTA	1 cut(s)	362
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	4 cut(s)	197, 263, 343, 542
SsiI	CCGC	2 cut(s)	23, 366
SspMI	CTAG	2 cut(s)	269, 399
TaaI	ACNGT	5 cut(s)	146, 290, 484, 509, 574
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	426, 530
TasI	AATT	4 cut(s)	197, 263, 343, 542
TatI	WGTACW	2 cut(s)	141, 146
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	126, 180
Tru9I	TTAA	2 cut(s)	126, 180
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	45, 210, 309, 356
XapI	RAATTY	3 cut(s)	263, 343, 542
XbaI	TCTAGA	2 cut(s)	268, 398
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	2 cut(s)	269, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.