Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

2205910 .. 2207473

Gene Structure 1564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03560.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTGCAGTTGCAGGGCCTGCGGGCGTTTTCAGTTGCCGAACCCACCCACTTGGCCTCCCCCTCCTACTCACGTGTCATCCGGACGTCGCTCCGCCTCCGCCGTCAGTCAGCTTCGTTCCCGACGAGGCGGCCACGTCTCCGATCACTCCCCGACGTCAGGAGCTGCGCCGCTCTCGCATTCGATTTCAAAGGTGGCAAAGGAATGAGTGAGTTTCTTGATGTTGAGCTCAGAGTCCGGGATTATGAACTTGATCAATATGGTGTCGTTAACAATGCTGTTTATGCAAGTTATTGCCAACATGGTCGTCATGAACTTCTGGAAAGGGTCGGCATCAGTGCCGATGGAGTTGCCCGCACTGGTGGCGCATTAGCATTGTCGGATTTGTCACTCAAATTCCTTGCACCTCTCAGAAGTGGAGATAAGTTTGTCATAAAGGTCAGGCTCGCTGGCTCCTCAGCTGCTCGCCTATACTTTGATCACTTCATTTTCAAGCTGCCAAATCAAGAGCCTATCTTGGAAGCAAAGGCCACAGCAGTATGGCTTGACAAAAACTATCGTCCTATCCGCATTCCACCAGAGGTGAAATCTAAACTTGTTCAATTTCTTCGCCACGAGGAGTCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

210

Amino Acids

23.54

Weight (kDa)

9.95

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	89, 159
AccBSI	CCGCTC	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	7 cut(s)	22, 94, 100, 130, 171, 355, 568
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	395
AcvI	CACGTG	1 cut(s)	74
AcyI	GRCGYC	2 cut(s)	86, 156
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	190, 493, 602
AjiI	CACGTC	1 cut(s)	137
AluBI	AGCT	5 cut(s)	113, 165, 229, 461, 496
AluI	AGCT	5 cut(s)	113, 165, 229, 461, 496
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	2 cut(s)	19, 165
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	4 cut(s)	16, 54, 131, 528
ApeKI	GCWGC	3 cut(s)	165, 461, 496
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	170, 368
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	614
BbrPI	CACGTG	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	152, 448, 483
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BclI	TGATCA	2 cut(s)	253, 478
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	131, 166, 171, 462, 497
BlsI	GCNGC	5 cut(s)	132, 167, 172, 463, 498
Bme1390I	CCNGG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	86, 156
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	81
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	244, 424, 471
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	152, 448, 483
BshFI	GGCC	4 cut(s)	18, 56, 133, 530
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	82, 238
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	179, 570
BsnI	GGCC	4 cut(s)	18, 56, 133, 530
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	143, 253, 478
BspACI	CCGC	7 cut(s)	22, 94, 100, 130, 171, 355, 568
BspANI	GGCC	4 cut(s)	18, 56, 133, 530
BspCNI	CTCAG	3 cut(s)	243, 423, 470
BspEI	TCCGGA	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	143, 253, 478
BssNI	GRCGYC	2 cut(s)	86, 156
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
BstACI	GRCGYC	2 cut(s)	86, 156
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	6 cut(s)	20, 24, 355, 447, 451, 466
BstDEI	CTNAG	3 cut(s)	230, 410, 457
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	170, 368
BstKTI	GATC	3 cut(s)	146, 256, 481
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	143, 253, 478
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 176, 284, 363
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	152, 448, 483
BstXI	CCANNNNNNTGG	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	18, 56, 133, 530
BtrI	CACGTC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	343, 357
Cac8I	GCNNGC	6 cut(s)	20, 24, 355, 447, 451, 466
CaiI	CAGNNNCTG	2 cut(s)	19, 165
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	2 cut(s)	170, 368
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	2 cut(s)	302, 311
DdeI	CTNAG	3 cut(s)	230, 410, 457
DpnI	GATC	3 cut(s)	145, 255, 480
DpnII	GATC	3 cut(s)	143, 253, 478
EaeI	YGGCCR	1 cut(s)	131
EciI	GGCGGA	2 cut(s)	83, 89
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco72I	CACGTG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	305, 314
FaiI	YATR	8 cut(s)	246, 261, 285, 303, 312, 434, 472, 541
FatI	CATG	2 cut(s)	301, 310
FauI	CCCGC	2 cut(s)	15, 362
FbaI	TGATCA	2 cut(s)	253, 478
Fnu4HI	GCNGC	5 cut(s)	131, 166, 171, 462, 497
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	131, 166, 171, 462, 497
GlaI	GCGC	2 cut(s)	169, 367
GluI	GCNGC	5 cut(s)	131, 166, 171, 462, 497
HaeIII	GGCC	4 cut(s)	18, 56, 133, 530
HapII	CCGG	2 cut(s)	82, 238
HhaI	GCGC	2 cut(s)	170, 368
Hin1I	GRCGYC	2 cut(s)	86, 156
Hin1II	CATG	2 cut(s)	305, 314
Hin6I	GCGC	2 cut(s)	168, 366
HinP1I	GCGC	2 cut(s)	168, 366
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	234, 620
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	82, 238
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	143, 233, 382, 413
Hpy188III	TCNNGA	7 cut(s)	82, 121, 160, 218, 311, 320, 506
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	3 cut(s)	91, 127, 158
HpyCH4IV	ACGT	4 cut(s)	73, 86, 136, 156
HpyCH4V	TGCA	4 cut(s)	7, 13, 287, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 176, 284, 363
HpyF3I	CTNAG	3 cut(s)	230, 410, 457
HpySE526I	ACGT	4 cut(s)	73, 86, 136, 156
Hsp92I	GRCGYC	2 cut(s)	86, 156
Hsp92II	CATG	2 cut(s)	305, 314
HspAI	GCGC	2 cut(s)	168, 366
Kpn2I	TCCGGA	1 cut(s)	81
Ksp22I	TGATCA	2 cut(s)	253, 478
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	143, 253, 478
LmnI	GCTCC	3 cut(s)	96, 162, 458
LpnPI	CCDG	9 cut(s)	32, 95, 145, 251, 305, 345, 427, 435, 591
Lsp1109I	GCAGC	3 cut(s)	152, 448, 483
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	4 cut(s)	73, 86, 136, 156
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	3 cut(s)	145, 255, 480
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	3 cut(s)	143, 253, 478
MboII	GAAGA	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	395, 602
MlyI	GAGTC	2 cut(s)	243, 629
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	8 cut(s)	67, 73, 107, 120, 417, 466, 574, 610
MroI	TCCGGA	1 cut(s)	81
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	82, 238
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	2 cut(s)	179, 570
MwoI	GCNNNNNNNGC	4 cut(s)	19, 176, 284, 363
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	3 cut(s)	143, 253, 478
NlaIII	CATG	2 cut(s)	305, 314
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	387
PagI	TCATGA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PctI	GAATGC	2 cut(s)	179, 570
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	132, 167, 172, 463, 498
PleI	GAGTC	2 cut(s)	242, 628
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
PpsI	GAGTC	2 cut(s)	242, 628
Ppu21I	YACGTR	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	231
PspCI	CACGTG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	19, 165
PvuII	CAGCTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	5 cut(s)	131, 166, 171, 462, 497
Sau3AI	GATC	3 cut(s)	143, 253, 478
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	243, 629
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	342
Sse9I	AATT	2 cut(s)	395, 602
SsiI	CCGC	7 cut(s)	22, 94, 100, 130, 171, 355, 568
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	4 cut(s)	76, 89, 139, 159
TaqI	TCGA	2 cut(s)	183, 623
TasI	AATT	2 cut(s)	395, 602
TauI	GCSGC	2 cut(s)	133, 173
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	343, 364
TseFI	GTSAC	1 cut(s)	387
TseI	GCWGC	3 cut(s)	165, 461, 496
Tsp45I	GTSAC	1 cut(s)	387
TspDTI	ATGAA	3 cut(s)	261, 327, 475
TspRI	CASTG	2 cut(s)	343, 364
XapI	RAATTY	1 cut(s)	395
ZraI	GACGTC	2 cut(s)	87, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.