Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008447.1

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

8979 .. 10168

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008447.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtcgaggttgcaggcatttccaattgccgacgcctctcacgtgacctttccccccttacgtgccatcccttcgtcactccatctccaccgccggtcagtctcttttccgaccacgcggccacgtgtccgatcattccccaccttccgaaaatgcaccagtacttgtctcgcattcgatttcaaaagtggcaaaggaatgagtgggtttcatgatgttgagctcaaagtccgcgattacgagcttgatcagtatggtgttgttaacaatgctgtctttgcaagttactgccagcacggtcgtcatgaacttctggaaagggttggcatgagcgctgatgcggttgcccgtactggtgatgcactagcattgtcagaattgtctctcaaattcattgcgcctttaagagtatggctcgatatttcattttcatgtcctaatttcatcttcttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

151

Amino Acids

17.0

Weight (kDa)

9.3

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	118, 234
AciI	CCGC	4 cut(s)	91, 118, 232, 341
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	389
AcvI	CACGTG	2 cut(s)	43, 125
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	163, 352
AfeI	AGCGCT	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	223, 244
AluI	AGCT	2 cut(s)	223, 244
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	106, 173, 387
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	335, 400
AsuHPI	GGTGA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	2 cut(s)	43, 125
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	2 cut(s)	74, 90
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	106, 173, 387
BfaI	CTAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmcAI	AGTACT	1 cut(s)	163
BmsI	GCATC	2 cut(s)	328, 349
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
BsaAI	YACGTR	3 cut(s)	43, 62, 125
BsaHI	GRCGYC	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	159, 358
Bse3DI	GCAATG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	159, 358
Bsh1236I	CGCG	2 cut(s)	118, 234
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	94
BsmAI	GTCTC	3 cut(s)	106, 173, 387
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	131, 247
BspACI	CCGC	4 cut(s)	91, 118, 232, 341
BspANI	GGCC	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	118, 234
BspHI	TCATGA	2 cut(s)	211, 304
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	159, 358
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	2 cut(s)	131, 247
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	3 cut(s)	43, 62, 125
BstC8I	GCNNGC	2 cut(s)	15, 293
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	118, 234
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 400
BstKTI	GATC	2 cut(s)	134, 250
BstMAI	GTCTC	3 cut(s)	106, 173, 387
BstMBI	GATC	2 cut(s)	131, 247
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstUI	CGCG	2 cut(s)	118, 234
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	15, 293
CciI	TCATGA	2 cut(s)	211, 304
CfoI	GCGC	2 cut(s)	335, 400
Cfr10I	RCCGGY	1 cut(s)	93
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	162, 351
CviAII	CATG	4 cut(s)	212, 305, 328, 432
CviJI	RGCY	4 cut(s)	121, 223, 244, 415
CviKI_1	RGCY	4 cut(s)	121, 223, 244, 415
CviQI	GTAC	2 cut(s)	162, 351
DpnI	GATC	2 cut(s)	133, 249
DpnII	GATC	2 cut(s)	131, 247
EaeI	YGGCCR	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	223
Eco72I	CACGTG	2 cut(s)	43, 125
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	4 cut(s)	215, 308, 331, 435
FaiI	YATR	6 cut(s)	213, 255, 306, 329, 412, 433
FatI	CATG	4 cut(s)	211, 304, 327, 431
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	2 cut(s)	334, 399
GluI	GCNGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	335, 400
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	215, 308, 331, 435
Hin6I	GCGC	2 cut(s)	333, 398
HinP1I	GCGC	2 cut(s)	333, 398
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	111, 131, 149, 376
Hpy188III	TCNNGA	3 cut(s)	212, 305, 314
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	81, 154
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	3 cut(s)	42, 61, 124
HpyCH4V	TGCA	4 cut(s)	13, 156, 281, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpySE526I	ACGT	3 cut(s)	42, 61, 124
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	215, 308, 331, 435
HspAI	GCGC	2 cut(s)	333, 398
Ksp22I	TGATCA	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	131, 247
LpnPI	CCDG	5 cut(s)	107, 172, 299, 305, 339
LweI	GCATC	2 cut(s)	328, 349
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	3 cut(s)	42, 61, 124
MaeIII	GTNAC	3 cut(s)	43, 75, 284
MalI	GATC	2 cut(s)	133, 249
MboI	GATC	2 cut(s)	131, 247
MboII	GAAGA	1 cut(s)	439
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	24, 377, 389, 439
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	1 cut(s)	46
MseI	TTAA	2 cut(s)	264, 404
MslI	CAYNNNNRTG	1 cut(s)	430
MspI	CCGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	173
MvnI	CGCG	2 cut(s)	118, 234
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	131, 247
NlaIII	CATG	4 cut(s)	215, 308, 331, 435
NmuCI	GTSAC	2 cut(s)	43, 75
PagI	TCATGA	2 cut(s)	211, 304
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	120
PmaCI	CACGTG	2 cut(s)	43, 125
PmlI	CACGTG	2 cut(s)	43, 125
Ppu21I	YACGTR	3 cut(s)	43, 62, 125
Psp124BI	GAGCTC	1 cut(s)	225
PspCI	CACGTG	2 cut(s)	43, 125
RsaI	GTAC	2 cut(s)	163, 352
RsaNI	GTAC	2 cut(s)	162, 351
RseI	CAYNNNNRTG	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	264, 404
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	131, 247
ScaI	AGTACT	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	8 cut(s)	11, 45, 50, 64, 127, 146, 225, 246
SfaNI	GCATC	2 cut(s)	328, 349
SmiMI	CAYNNNNRTG	1 cut(s)	430
Sse9I	AATT	4 cut(s)	24, 377, 389, 439
SsiI	CCGC	4 cut(s)	91, 118, 232, 341
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	3 cut(s)	45, 64, 127
TaqI	TCGA	3 cut(s)	5, 177, 417
TasI	AATT	4 cut(s)	24, 377, 389, 439
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	264, 404
Tru9I	TTAA	2 cut(s)	264, 404
TseFI	GTSAC	2 cut(s)	43, 75
Tsp45I	GTSAC	2 cut(s)	43, 75
TspDTI	ATGAA	6 cut(s)	200, 321, 382, 414, 420, 433
XapI	RAATTY	1 cut(s)	389
XspI	CTAG	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.