Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

52340933 .. 52343142

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG294900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTGAGGTTGCAGGCATATTCAATTGCCGACTACAATCACGTGACCTTTCCCTCCTCATGCGTCATTCCTACTTCACTCCCCCACCGTCAATCGGTATCTTTTCCAACCACACGGACACGTTTCCGATCACTCCCCACTGTCAGGATATGCAGCACTTCCGTTGCATGCGATATGGGAGGTCGCTTAAGAAGGAGTGGTTTTTATGATGTTGAGCTTAAAGTCCGAGAATATGAGCTTGATCGGTATGGCGTGGTTAACAATGCTGTCTATGTAGATTATTGCCAGCACGCTTTTGATGAACATTTAGAAAGCGTCGGCCTGAGTGCTGATGCAATTGCCCAAACCGGTGAAGCAATGGCTTTGTCAGCATCGTCTCTGAAATTCATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGTTGCGGATGACTAACTCCTCAGCCGCTCGCCTGTACTTTGAGCAATTCATTTTCAAGCTGCCAAATCTAGAGGTTTTCCATAATCACTCCCTAATCTTATTTACAATTAAACACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

181

Amino Acids

20.49

Weight (kDa)

8.93

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	75 - 161	1.9e-14	Thioesterase-like superfamily
4HBT	PF03061	83 - 164	1e-08	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	452
AciI	CCGC	2 cut(s)	430, 450
AcsI	RAATTY	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	94, 144
AflII	CTTAAG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	119
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	24, 481
AluBI	AGCT	3 cut(s)	217, 238, 484
AluI	AGCT	3 cut(s)	217, 238, 484
Alw26I	GTCTC	2 cut(s)	381, 402
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	153, 484
ApoI	RAATTY	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	362
BbrPI	CACGTG	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	165, 471
BcoDI	GTCTC	2 cut(s)	381, 402
BfaI	CTAG	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	3 cut(s)	154, 450, 485
BlsI	GCNGC	3 cut(s)	155, 451, 486
BmsI	GCATC	2 cut(s)	322, 380
Bpu10I	CCTNAGC	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 144
Bse118I	RCCGGY	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	363, 387
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	94, 144
BseMI	GCAATG	2 cut(s)	363, 387
BseMII	CTCAG	2 cut(s)	314, 459
BseRI	GAGGAG	2 cut(s)	46, 433
BseXI	GCAGC	2 cut(s)	165, 471
BshFI	GGCC	1 cut(s)	321
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	94, 144
BsmAI	GTCTC	2 cut(s)	381, 402
BsmBI	CGTCTC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	128, 241
BspACI	CCGC	2 cut(s)	430, 450
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	315, 458
BspTI	CTTAAG	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	452
BsrDI	GCAATG	2 cut(s)	363, 387
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssMI	GATC	2 cut(s)	128, 241
Bst4CI	ACNGT	2 cut(s)	89, 142
BstAFI	CTTAAG	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	5 cut(s)	15, 169, 287, 291, 454
BstDEI	CTNAG	2 cut(s)	323, 445
BstF5I	GGATG	1 cut(s)	438
BstKTI	GATC	2 cut(s)	131, 244
BstMAI	GTCTC	2 cut(s)	381, 402
BstMBI	GATC	2 cut(s)	128, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	165, 471
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	5 cut(s)	15, 169, 287, 291, 454
Cfr10I	RCCGGY	1 cut(s)	347
CseI	GACGC	2 cut(s)	52, 304
Csp6I	GTAC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	60, 168
CviJI	RGCY	6 cut(s)	217, 238, 321, 362, 449, 484
CviKI_1	RGCY	6 cut(s)	217, 238, 321, 362, 449, 484
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	323, 445
DpnI	GATC	2 cut(s)	130, 243
DpnII	GATC	2 cut(s)	128, 241
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
Eco72I	CACGTG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	2 cut(s)	63, 171
FatI	CATG	2 cut(s)	59, 167
Fnu4HI	GCNGC	3 cut(s)	154, 450, 485
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	3 cut(s)	154, 450, 485
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	3 cut(s)	154, 450, 485
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	52, 304
Hin1II	CATG	2 cut(s)	63, 171
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	128, 227, 381
Hpy188III	TCNNGA	2 cut(s)	145, 494
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	89, 142
HpyCH4IV	ACGT	2 cut(s)	42, 121
HpyCH4V	TGCA	5 cut(s)	13, 153, 167, 335, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	323, 445
HpySE526I	ACGT	2 cut(s)	42, 121
Hsp92II	CATG	2 cut(s)	63, 171
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	128, 241
LpnPI	CCDG	5 cut(s)	130, 299, 335, 361, 470
Lsp1109I	GCAGC	2 cut(s)	165, 471
LweI	GCATC	2 cut(s)	322, 380
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	2 cut(s)	42, 121
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	130, 243
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	2 cut(s)	128, 241
MfeI	CAATTG	2 cut(s)	24, 336
MluCI	AATT	5 cut(s)	24, 336, 383, 470, 531
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	6 cut(s)	64, 67, 173, 405, 454, 490
MseI	TTAA	4 cut(s)	188, 219, 258, 534
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	1 cut(s)	348
MunI	CAATTG	2 cut(s)	24, 336
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	2 cut(s)	128, 241
NlaIII	CATG	2 cut(s)	63, 171
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	155, 451, 486
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	4 cut(s)	188, 219, 258, 534
SatI	GCNGC	3 cut(s)	154, 450, 485
Sau3AI	GATC	2 cut(s)	128, 241
SfaNI	GCATC	2 cut(s)	322, 380
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	5 cut(s)	24, 336, 383, 470, 531
SsiI	CCGC	2 cut(s)	430, 450
SspMI	CTAG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	89, 142
TaiI	ACGT	2 cut(s)	45, 124
TasI	AATT	5 cut(s)	24, 336, 383, 470, 531
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	452
Tru1I	TTAA	4 cut(s)	188, 219, 258, 534
Tru9I	TTAA	4 cut(s)	188, 219, 258, 534
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	153, 484
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	315, 376, 463
TspGWI	ACGGA	2 cut(s)	130, 151
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	171
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.