Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

48384617 .. 48386254

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTGAGGTTGCAGGCATATTCAATTGCCGACTACAATCACGTGACCTTTGCCTCCTCTTGCGTCATTCCTACTTCACTCCATTCCCACCGTCAATCGGTATCTTTTCCAACCACACGGACACGTTTCCGATCACTCCCCACTCTTAAAGTCCGAGAATATGAGCTTGATCGGTATGGCGTGGTTAACAATGCTGTCTATGTAGATTATTGCCAGCACGCTTTTGATGAACATTTAGAAAGCGTCGGCCTGAGTGCTGATGCAATTGCCCAAACCGGTGAAGCAATGGCGTTGTCAGCATCGTCTCTGAAATTCATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGTTGCGGATGACTAACTCCTCAGCGGCTGGCCTGTATCTTGAGCAATTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTCGAAGGAACGGCCACAGTTGTGTGGCTTAATAAAGACTATCGCCCTGTCCGTATTCCATCGGAGGTGACATCTAAATTTGTCCAGTTTCATCGCCATAAGGAGTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

181

Amino Acids

20.47

Weight (kDa)

8.87

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	51 - 171	7.3e-17	Thioesterase-like superfamily
4HBT	PF03061	59 - 140	1.5e-07	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AciI	CCGC	2 cut(s)	358, 377
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	311, 509
AcvI	CACGTG	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	24, 409
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	3 cut(s)	166, 412, 543
AluI	AGCT	3 cut(s)	166, 412, 543
Alw26I	GTCTC	2 cut(s)	309, 330
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	247, 382, 444
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	2 cut(s)	311, 509
AsiGI	ACCGGT	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	290, 511
AsuII	TTCGAA	1 cut(s)	435
BbrPI	CACGTG	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	499
BceAI	ACGGC	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	309, 330
BfaI	CTAG	2 cut(s)	422, 540
BisI	GCNGC	2 cut(s)	378, 413
BlsI	GCNGC	2 cut(s)	379, 414
BmsI	GCATC	2 cut(s)	250, 308
Bpu10I	CCTNAGC	1 cut(s)	373
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	2 cut(s)	291, 315
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	2 cut(s)	291, 315
BseMII	CTCAG	2 cut(s)	242, 387
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	46, 361
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	3 cut(s)	249, 384, 446
BshTI	ACCGGT	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	309, 330
BsmBI	CGTCTC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	249, 384, 446
Bsp119I	TTCGAA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	131, 169
BspACI	CCGC	2 cut(s)	358, 377
BspANI	GGCC	3 cut(s)	249, 384, 446
BspCNI	CTCAG	2 cut(s)	243, 386
BspT104I	TTCGAA	1 cut(s)	435
BsrDI	GCAATG	2 cut(s)	291, 315
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	2 cut(s)	131, 169
Bst4CI	ACNGT	2 cut(s)	92, 451
BstBAI	YACGTR	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	15, 215, 219, 382
BstDEI	CTNAG	2 cut(s)	251, 373
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	2 cut(s)	134, 172
BstMAI	GTCTC	2 cut(s)	309, 330
BstMBI	GATC	2 cut(s)	131, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	249, 384, 446
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	366
Cac8I	GCNNGC	4 cut(s)	15, 215, 219, 382
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	275
CseI	GACGC	2 cut(s)	52, 232
CspAI	ACCGGT	1 cut(s)	275
CviJI	RGCY	9 cut(s)	166, 249, 380, 384, 412, 427, 446, 460, 543
CviKI_1	RGCY	9 cut(s)	166, 249, 380, 384, 412, 427, 446, 460, 543
DdeI	CTNAG	2 cut(s)	251, 373
DpnI	GATC	2 cut(s)	133, 171
DpnII	GATC	2 cut(s)	131, 169
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	444
Eco72I	CACGTG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	309
FaiI	YATR	6 cut(s)	19, 162, 177, 201, 350, 531
Fnu4HI	GCNGC	2 cut(s)	378, 413
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	378, 413
FspBI	CTAG	2 cut(s)	422, 540
GluI	GCNGC	2 cut(s)	378, 413
HaeIII	GGCC	3 cut(s)	249, 384, 446
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	52, 232
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	536
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	290, 511
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	131, 155, 309, 496
Hpy188III	TCNNGA	2 cut(s)	392, 422
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	92, 451
HpyCH4IV	ACGT	2 cut(s)	42, 124
HpyCH4V	TGCA	3 cut(s)	13, 263, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	251, 373
HpySE526I	ACGT	2 cut(s)	42, 124
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	131, 169
LpnPI	CCDG	7 cut(s)	227, 263, 289, 366, 398, 492, 530
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	2 cut(s)	250, 308
MaeI	CTAG	2 cut(s)	422, 540
MaeII	ACGT	2 cut(s)	42, 124
MaeIII	GTNAC	2 cut(s)	43, 499
MalI	GATC	2 cut(s)	133, 171
MboI	GATC	2 cut(s)	131, 169
MboII	GAAGA	1 cut(s)	424
MfeI	CAATTG	2 cut(s)	24, 264
MluCI	AATT	5 cut(s)	24, 264, 311, 398, 509
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	64, 67, 333, 382, 490
MseI	TTAA	3 cut(s)	147, 186, 462
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	24, 264
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	131, 169
NmuCI	GTSAC	2 cut(s)	43, 499
NspV	TTCGAA	1 cut(s)	435
OliI	CACNNNNGTG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	379, 414
PleI	GAGTC	1 cut(s)	544
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	544
Ppu21I	YACGTR	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	147, 186, 462
SatI	GCNGC	2 cut(s)	378, 413
Sau3AI	GATC	2 cut(s)	131, 169
SchI	GAGTC	1 cut(s)	545
SetI	ASST	9 cut(s)	11, 45, 50, 127, 168, 325, 414, 501, 545
SfaNI	GCATC	2 cut(s)	250, 308
SfuI	TTCGAA	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	24, 264, 311, 398, 509
SsiI	CCGC	2 cut(s)	358, 377
SspMI	CTAG	2 cut(s)	422, 540
TaaI	ACNGT	2 cut(s)	92, 451
TaiI	ACGT	2 cut(s)	45, 127
TaqI	TCGA	1 cut(s)	435
TasI	AATT	5 cut(s)	24, 264, 311, 398, 509
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	147, 186, 462
Tru9I	TTAA	3 cut(s)	147, 186, 462
TseFI	GTSAC	2 cut(s)	43, 499
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	2 cut(s)	43, 499
TspDTI	ATGAA	4 cut(s)	243, 304, 391, 512
TspGWI	ACGGA	2 cut(s)	133, 473
XapI	RAATTY	2 cut(s)	311, 509
XbaI	TCTAGA	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.