Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

56019457 .. 56021014

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCGAGGTTGCAGGCATTTCCAATTGCCGACGCCTCTCACGTGACCTTTCCCCCCTTACGTGCCATCCCTTCGTCACTCCATCTCCACCGCCGGTCAGTCTCTTTTCCGAACCCGCGGCCACGTGTCCGATCATTCCCCACCTTCCGAAAATGCACCAGTACTTGTCTCGCATTCGATTTCAAAAGTGGCAAAGGAATGAGTGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTTAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATGAACTTCTGGAAAGGGTTGGCATGAGCGCTGATGCGGTTGCCCGTACTGGTGATGCACTAGCATTGTCAGAATTGTCTCTCAAATTCATTGCGCCTCTAAGAAGTGGAGACAAGTTTGTCATAAAGGTGAGGGTGGCCAACTCTTCAGCTGCTCGCTTGTATTTTGATCACTTTATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACTGCAGTGTGGCTTGATAAAAACTATCGCCCTATCCGTATTCCGCCGGAGGTGAGATCTAAACTTGTTCAATTTCTTCGCCGTGAGGAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

207

Amino Acids

23.47

Weight (kDa)

9.91

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	77 - 197	3e-17	Thioesterase-like superfamily
4HBT	PF03061	85 - 166	3.3e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccII	CGCG	2 cut(s)	118, 234
AciI	CCGC	6 cut(s)	91, 116, 118, 232, 341, 569
AcoI	YGGCCR	2 cut(s)	119, 441
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	2 cut(s)	43, 125
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	163, 352
AfeI	AGCGCT	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	184, 487, 596
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	223, 244, 455, 490
AluI	AGCT	4 cut(s)	223, 244, 455, 490
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	4 cut(s)	106, 173, 387, 408
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	3 cut(s)	119, 441, 522
ApeKI	GCWGC	2 cut(s)	455, 490
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	335, 400
AsuHPI	GGTGA	3 cut(s)	368, 445, 589
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	2 cut(s)	43, 125
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	442, 477
BccI	CCATC	2 cut(s)	74, 90
BceAI	ACGGC	1 cut(s)	591
BclI	TGATCA	2 cut(s)	247, 472
BcoDI	GTCTC	4 cut(s)	106, 173, 387, 408
BfaI	CTAG	2 cut(s)	365, 500
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	336
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	3 cut(s)	119, 456, 491
BlsI	GCNGC	3 cut(s)	120, 457, 492
BmcAI	AGTACT	1 cut(s)	163
BmsI	GCATC	2 cut(s)	328, 349
BsaAI	YACGTR	3 cut(s)	43, 62, 125
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	159, 358
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	159, 358
BseXI	GCAGC	2 cut(s)	442, 477
Bsh1236I	CGCG	2 cut(s)	118, 234
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	121, 443, 524
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	94, 572
BsmAI	GTCTC	4 cut(s)	106, 173, 387, 408
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	121, 443, 524
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	131, 247, 472, 581
BspACI	CCGC	6 cut(s)	91, 116, 118, 232, 341, 569
BspANI	GGCC	3 cut(s)	121, 443, 524
BspFNI	CGCG	2 cut(s)	118, 234
BspHI	TCATGA	2 cut(s)	211, 304
BspMAI	CTGCAG	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	159, 358
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	131, 247, 472, 581
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	3 cut(s)	43, 62, 125
BstC8I	GCNNGC	3 cut(s)	15, 293, 460
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	118, 234
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 400
BstKTI	GATC	4 cut(s)	134, 250, 475, 584
BstMAI	GTCTC	4 cut(s)	106, 173, 387, 408
BstMBI	GATC	4 cut(s)	131, 247, 472, 581
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	2 cut(s)	118, 234
BstV1I	GCAGC	2 cut(s)	442, 477
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	121, 443, 524
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	2 cut(s)	525, 537
BtsIMutI	CAGTG	2 cut(s)	525, 537
Cac8I	GCNNGC	3 cut(s)	15, 293, 460
CciI	TCATGA	2 cut(s)	211, 304
CfoI	GCGC	2 cut(s)	335, 400
Cfr10I	RCCGGY	1 cut(s)	93
Cfr42I	CCGCGG	1 cut(s)	119
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	162, 351
CviAII	CATG	3 cut(s)	212, 305, 328
CviJI	RGCY	9 cut(s)	121, 223, 244, 443, 455, 490, 505, 524, 538
CviKI_1	RGCY	9 cut(s)	121, 223, 244, 443, 455, 490, 505, 524, 538
CviQI	GTAC	2 cut(s)	162, 351
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	4 cut(s)	133, 249, 474, 583
DpnII	GATC	4 cut(s)	131, 247, 472, 581
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	2 cut(s)	119, 441
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	2 cut(s)	43, 125
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	3 cut(s)	215, 308, 331
FaiI	YATR	5 cut(s)	213, 255, 306, 329, 428
FatI	CATG	3 cut(s)	211, 304, 327
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	2 cut(s)	247, 472
Fnu4HI	GCNGC	3 cut(s)	119, 456, 491
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	119, 456, 491
FspBI	CTAG	2 cut(s)	365, 500
GlaI	GCGC	2 cut(s)	334, 399
GluI	GCNGC	3 cut(s)	119, 456, 491
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	121, 443, 524
HapII	CCGG	2 cut(s)	94, 572
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	335, 400
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	215, 308, 331
Hin6I	GCGC	2 cut(s)	333, 398
HinP1I	GCGC	2 cut(s)	333, 398
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	614
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	94, 572
HphI	GGTGA	3 cut(s)	368, 445, 589
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	111, 131, 149, 376
Hpy188III	TCNNGA	4 cut(s)	212, 305, 314, 500
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	81, 154
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	3 cut(s)	42, 61, 124
HpyCH4V	TGCA	5 cut(s)	13, 156, 281, 362, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	3 cut(s)	42, 61, 124
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	215, 308, 331
HspAI	GCGC	2 cut(s)	333, 398
Ksp22I	TGATCA	2 cut(s)	247, 472
KspAI	GTTAAC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	131, 247, 472, 581
LpnPI	CCDG	6 cut(s)	107, 172, 299, 305, 339, 585
Lsp1109I	GCAGC	2 cut(s)	442, 477
LweI	GCATC	2 cut(s)	328, 349
MaeI	CTAG	2 cut(s)	365, 500
MaeII	ACGT	3 cut(s)	42, 61, 124
MaeIII	GTNAC	3 cut(s)	43, 75, 284
MalI	GATC	4 cut(s)	133, 249, 474, 583
MboI	GATC	4 cut(s)	131, 247, 472, 581
MboII	GAAGA	2 cut(s)	441, 593
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	4 cut(s)	24, 377, 389, 596
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	623
MnlI	CCTC	5 cut(s)	46, 411, 429, 568, 604
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	431, 530
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	118, 455
MspI	CCGG	2 cut(s)	94, 572
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	173
MvnI	CGCG	2 cut(s)	118, 234
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	4 cut(s)	131, 247, 472, 581
NlaIII	CATG	3 cut(s)	215, 308, 331
NmuCI	GTSAC	2 cut(s)	43, 75
OliI	CACNNNNGTG	1 cut(s)	530
PagI	TCATGA	2 cut(s)	211, 304
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 559
PctI	GAATGC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	120, 457, 492
PleI	GAGTC	1 cut(s)	622
PmaCI	CACGTG	2 cut(s)	43, 125
PmlI	CACGTG	2 cut(s)	43, 125
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	3 cut(s)	43, 62, 125
Psp124BI	GAGCTC	1 cut(s)	225
PspCI	CACGTG	2 cut(s)	43, 125
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	163, 352
RsaNI	GTAC	2 cut(s)	162, 351
RseI	CAYNNNNRTG	2 cut(s)	431, 530
SacI	GAGCTC	1 cut(s)	225
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	119, 456, 491
Sau3AI	GATC	4 cut(s)	131, 247, 472, 581
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	328, 349
SfcI	CTRYAG	1 cut(s)	528
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	431, 530
Sse9I	AATT	4 cut(s)	24, 377, 389, 596
SsiI	CCGC	6 cut(s)	91, 116, 118, 232, 341, 569
SspMI	CTAG	2 cut(s)	365, 500
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	3 cut(s)	45, 64, 127
TaqI	TCGA	2 cut(s)	5, 177
TasI	AATT	4 cut(s)	24, 377, 389, 596
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	532, 537
TseFI	GTSAC	2 cut(s)	43, 75
TseI	GCWGC	2 cut(s)	455, 490
Tsp45I	GTSAC	2 cut(s)	43, 75
TspDTI	ATGAA	3 cut(s)	200, 321, 382
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	532, 537
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	499
XspI	CTAG	2 cut(s)	365, 500
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.