Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

9238385 .. 9239891

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTGAGTGTGCAGGCATTTCCAATTGCCAACGCCTCTCACGCGACCTTTCCCCCCTCACGTGCCATCCCTTCGTCACTCCATCTCCACCGCCGGTTAGTCTCTTTTCCGACCACACGGCCACGTGTCCGATCATTCCCCACCTTCCGGAAATGCACCACTTGTCTCGCATTCGATTTCAAAAGTGGCAAAGGAATGAGTGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTTAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATGAACTTCTGGAAAGGGTTGGCGTGAGCGCTGATGCGGTTGCCCGTACCGGTGATGCACTAGCATTGTCAGAATTATCTCTCAAATTCATTGCGCCTCTAAGAAGTGGAGACAAGTTTGTCATAAAGGTGAGGGTGGCCAACTCTTCAGGTGCTCGCTTGTATTTTGATCACTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACTTCAGTGTGGCTTGATAAAAACTATCGCCCTATCCGTATTCCACCGGAGGTGAGATCTAAATTTGTTCAATTTCTTCCCCTTGAGGAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

207

Amino Acids

23.19

Weight (kDa)

9.71

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 196	2.1e-16	Thioesterase-like superfamily
4HBT	PF03061	84 - 165	1.9e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccII	CGCG	2 cut(s)	44, 231
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	3 cut(s)	91, 229, 338
AcoI	YGGCCR	2 cut(s)	119, 438
AcsI	RAATTY	2 cut(s)	386, 584
AcuI	CTGAAG	2 cut(s)	432, 510
AcvI	CACGTG	2 cut(s)	62, 125
AfaI	GTAC	1 cut(s)	349
AfeI	AGCGCT	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	124
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	181, 484, 593
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	220, 241, 487
AluI	AGCT	3 cut(s)	220, 241, 487
Alw21I	GWGCWC	2 cut(s)	222, 457
Alw26I	GTCTC	3 cut(s)	106, 170, 405
Aor13HI	TCCGGA	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	3 cut(s)	119, 438, 519
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	2 cut(s)	386, 584
AsiGI	ACCGGT	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	332, 397
AsuHPI	GGTGA	3 cut(s)	365, 442, 586
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	222
BbrPI	CACGTG	2 cut(s)	62, 125
Bbv12I	GWGCWC	2 cut(s)	222, 457
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	2 cut(s)	74, 90
BceAI	ACGGC	1 cut(s)	134
BclI	TGATCA	2 cut(s)	244, 469
BcoDI	GTCTC	3 cut(s)	106, 170, 405
BfaI	CTAG	2 cut(s)	362, 497
BfoI	RGCGCY	1 cut(s)	333
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
BmsI	GCATC	2 cut(s)	325, 346
BsaAI	YACGTR	2 cut(s)	62, 125
BsaWI	WCCGGW	3 cut(s)	147, 350, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	2 cut(s)	93, 350
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	147
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	44, 231
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	3 cut(s)	121, 440, 521
BshTI	ACCGGT	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	222, 457
BsiSI	CCGG	4 cut(s)	94, 148, 351, 569
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	3 cut(s)	106, 170, 405
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	121, 440, 521
Bsp1286I	GDGCHC	2 cut(s)	222, 457
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	131, 244, 469, 578
BspACI	CCGC	3 cut(s)	91, 229, 338
BspANI	GGCC	3 cut(s)	121, 440, 521
BspEI	TCCGGA	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	44, 231
BspHI	TCATGA	2 cut(s)	208, 301
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	2 cut(s)	93, 350
BssAI	RCCGGY	2 cut(s)	93, 350
BssMI	GATC	4 cut(s)	131, 244, 469, 578
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	451
BstBAI	YACGTR	2 cut(s)	62, 125
BstC8I	GCNNGC	3 cut(s)	15, 290, 457
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	44, 231
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	332, 397
BstKTI	GATC	4 cut(s)	134, 247, 472, 581
BstMAI	GTCTC	3 cut(s)	106, 170, 405
BstMBI	GATC	4 cut(s)	131, 244, 469, 578
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 275
BstUI	CGCG	2 cut(s)	44, 231
BstV1I	GCAGC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	121, 440, 521
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	15, 290, 457
CciI	TCATGA	2 cut(s)	208, 301
CfoI	GCGC	2 cut(s)	332, 397
Cfr10I	RCCGGY	2 cut(s)	93, 350
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	2 cut(s)	209, 302
CviJI	RGCY	8 cut(s)	121, 220, 241, 440, 487, 502, 521, 535
CviKI_1	RGCY	8 cut(s)	121, 220, 241, 440, 487, 502, 521, 535
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	4 cut(s)	133, 246, 471, 580
DpnII	GATC	4 cut(s)	131, 244, 469, 578
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	2 cut(s)	119, 438
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco47III	AGCGCT	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	432, 510
Eco72I	CACGTG	2 cut(s)	62, 125
EcoICRI	GAGCTC	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	212, 305
FaiI	YATR	4 cut(s)	210, 252, 303, 425
FatI	CATG	2 cut(s)	208, 301
FbaI	TGATCA	2 cut(s)	244, 469
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	2 cut(s)	362, 497
GlaI	GCGC	2 cut(s)	331, 396
GluI	GCNGC	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	121, 440, 521
HapII	CCGG	4 cut(s)	94, 148, 351, 569
HhaI	GCGC	2 cut(s)	332, 397
Hin1II	CATG	2 cut(s)	212, 305
Hin6I	GCGC	2 cut(s)	330, 395
HinP1I	GCGC	2 cut(s)	330, 395
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	611
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	4 cut(s)	94, 148, 351, 569
HphI	GGTGA	3 cut(s)	365, 442, 586
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	111, 131, 373
Hpy188III	TCNNGA	5 cut(s)	148, 209, 302, 311, 497
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	81, 154
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	61, 124
HpyCH4V	TGCA	4 cut(s)	13, 156, 278, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 275
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	2 cut(s)	61, 124
Hsp92II	CATG	2 cut(s)	212, 305
HspAI	GCGC	2 cut(s)	330, 395
Kpn2I	TCCGGA	1 cut(s)	147
Ksp22I	TGATCA	2 cut(s)	244, 469
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	131, 244, 469, 578
LpnPI	CCDG	7 cut(s)	107, 161, 296, 302, 364, 435, 582
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	2 cut(s)	325, 346
MaeI	CTAG	2 cut(s)	362, 497
MaeII	ACGT	2 cut(s)	61, 124
MaeIII	GTNAC	2 cut(s)	75, 281
MalI	GATC	4 cut(s)	133, 246, 471, 580
MboI	GATC	4 cut(s)	131, 244, 469, 578
MboII	GAAGA	2 cut(s)	438, 590
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	222, 457
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	5 cut(s)	24, 374, 386, 584, 593
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	46, 67, 408, 426, 565, 601
Mox20I	TGGCCA	1 cut(s)	440
MroI	TCCGGA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	428, 527
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	4 cut(s)	94, 148, 351, 569
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	170
MvnI	CGCG	2 cut(s)	44, 231
MwoI	GCNNNNNNNGC	2 cut(s)	41, 275
NdeII	GATC	4 cut(s)	131, 244, 469, 578
NlaIII	CATG	2 cut(s)	212, 305
NmuCI	GTSAC	1 cut(s)	75
OliI	CACNNNNGTG	1 cut(s)	527
PagI	TCATGA	2 cut(s)	208, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	1 cut(s)	619
PmaCI	CACGTG	2 cut(s)	62, 125
PmlI	CACGTG	2 cut(s)	62, 125
PpsI	GAGTC	1 cut(s)	619
Ppu21I	YACGTR	2 cut(s)	62, 125
Psp124BI	GAGCTC	1 cut(s)	222
PspCI	CACGTG	2 cut(s)	62, 125
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	428, 527
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	4 cut(s)	131, 244, 469, 578
SchI	GAGTC	1 cut(s)	620
SduI	GDGCHC	2 cut(s)	222, 457
SfaNI	GCATC	2 cut(s)	325, 346
SmiMI	CAYNNNNRTG	2 cut(s)	428, 527
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	5 cut(s)	24, 374, 386, 584, 593
SsiI	CCGC	3 cut(s)	91, 229, 338
SspMI	CTAG	2 cut(s)	362, 497
SstI	GAGCTC	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	2 cut(s)	64, 127
TaqI	TCGA	1 cut(s)	174
TasI	AATT	5 cut(s)	24, 374, 386, 584, 593
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	4 cut(s)	197, 318, 379, 466
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	386, 584
XbaI	TCTAGA	1 cut(s)	496
XspI	CTAG	2 cut(s)	362, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.