Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

12947517 .. 12948849

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCTTAAAGCTACCGGCACAGTGGCTCCGGCTATGCACGTGGTGTTTCCCTGTTTTTCGAGTCGACCGCTTATCCTACCTCTCCGGAGCACAAAGACCTTCAAACCTCTCTCATGTTTCAAACAGCAAGGAGGCAAAGGAATGAATGGAGTCCATGAGATTGAACTTAAAGTTCGTGATTATGAATTAGACCAATTTGGTGTTGTGAACAACGCTGTTTATGCAAACTACTGCCAACACGGTCAACACGAGTTTATGGAGACTATCGGTATCAACTGTGATGAAGTGTCCCGTTCTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGTTTCTTGCACCTTTACGTAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACATCTATGACGCGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAATGGCTGTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGTCTTACATACGCTCTAATTTCGGTCACTTCCAACGTCAACACGTTGTCGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

189

Amino Acids

21.5

Weight (kDa)

9.17

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	58 - 175	1.5e-14	Thioesterase-like superfamily
4HBT	PF03061	66 - 149	1.9e-12	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	4 cut(s)	103, 121, 164, 416
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	311, 382
BanI	GGYRCC	1 cut(s)	492
BauI	CACGAG	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	518
BmiI	GGNNCC	2 cut(s)	27, 494
BmsI	GCATC	1 cut(s)	347
BsaAI	YACGTR	2 cut(s)	40, 350
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse118I	RCCGGY	1 cut(s)	14
BseAI	TCCGGA	1 cut(s)	84
BseGI	GGATG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	403
Bsh1285I	CGRYCG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	15, 29, 85
BslFI	GGGAC	2 cut(s)	274, 403
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	274, 403
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	84
BspACI	CCGC	1 cut(s)	68
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	27, 494
BspT107I	GGYRCC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst4CI	ACNGT	5 cut(s)	22, 242, 278, 420, 497
BstBAI	YACGTR	2 cut(s)	40, 350
BstF5I	GGATG	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	405
BstMAI	GTCTC	1 cut(s)	254
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSNI	TACGTA	1 cut(s)	350
BstUI	CGCG	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	14
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	114, 155
CviJI	RGCY	6 cut(s)	11, 26, 32, 448, 473, 481
CviKI_1	RGCY	6 cut(s)	11, 26, 32, 448, 473, 481
CviQI	GTAC	1 cut(s)	493
DraI	TTTAAA	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	384
Eco72I	CACGTG	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	384
FaeI	CATG	2 cut(s)	117, 158
FaiI	YATR	8 cut(s)	35, 115, 156, 183, 222, 257, 398, 521
FaqI	GGGAC	2 cut(s)	274, 403
FatI	CATG	2 cut(s)	113, 154
FblI	GTMKAC	1 cut(s)	64
FokI	GGATG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	404
HapII	CCGG	3 cut(s)	15, 29, 85
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	117, 158
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	3 cut(s)	65, 245, 551
HindII	GTYRAC	3 cut(s)	65, 245, 551
HinfI	GANTC	2 cut(s)	61, 150
HpaII	CCGG	3 cut(s)	15, 29, 85
HphI	GGTGA	2 cut(s)	311, 382
Hpy166II	GTNNAC	4 cut(s)	65, 208, 245, 551
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	85, 176, 443
Hpy8I	GTNNAC	4 cut(s)	65, 208, 245, 551
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	5 cut(s)	22, 242, 278, 420, 497
HpyCH4IV	ACGT	4 cut(s)	39, 349, 547, 555
HpyCH4V	TGCA	4 cut(s)	37, 224, 341, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpySE526I	ACGT	4 cut(s)	39, 349, 547, 555
Hsp92II	CATG	2 cut(s)	117, 158
HspAI	GCGC	1 cut(s)	403
Kpn2I	TCCGGA	1 cut(s)	84
KpnI	GGTACC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	31, 87
LpnPI	CCDG	6 cut(s)	28, 42, 64, 98, 282, 513
LweI	GCATC	1 cut(s)	347
MaeII	ACGT	4 cut(s)	39, 349, 547, 555
MaeIII	GTNAC	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	185, 194, 320, 529
MlyI	GAGTC	2 cut(s)	70, 159
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	6 cut(s)	90, 117, 125, 372, 451, 483
MroI	TCCGGA	1 cut(s)	84
MseI	TTAA	3 cut(s)	6, 168, 429
MspI	CCGG	3 cut(s)	15, 29, 85
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	117, 158
NlaIV	GGNNCC	2 cut(s)	27, 494
NmuCI	GTSAC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PleI	GAGTC	2 cut(s)	69, 158
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
PpsI	GAGTC	2 cut(s)	69, 158
Ppu21I	YACGTR	2 cut(s)	40, 350
PspCI	CACGTG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	27, 494
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	6, 168, 429
SchI	GAGTC	2 cut(s)	70, 159
SduI	GDGCHC	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	347
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	4 cut(s)	185, 194, 320, 529
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	566
TaaI	ACNGT	5 cut(s)	22, 242, 278, 420, 497
TaiI	ACGT	4 cut(s)	42, 352, 550, 558
TaqI	TCGA	3 cut(s)	59, 64, 561
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	4 cut(s)	185, 194, 320, 529
Tru1I	TTAA	3 cut(s)	6, 168, 429
Tru9I	TTAA	3 cut(s)	6, 168, 429
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	4 cut(s)	158, 198, 297, 412
TspRI	CASTG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.