Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

28287310 .. 28288784

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTGAGGTTGCAGGCATTTTCAATTCCCGACTACAATCCGGTTACCTTTCCCTCTTCATGCGTCCTTCCTAACTCGCTTCATCTTCACTGTCAGTCAGTATCTTTTCCAACCACACGGACGCGTCTCCGGTCACTCCGCATCGTCAGGATATGCAGCACTTCCCTTGCAGGCGATTTCGGAGGTGGCATAGGAATGAGTGGTTCTTATGATGTTGAGCTTAAAGTCCGGGACTATGAGCTTGATCAGTATGGCGTCGTAAACAATGCTGTCTATGCAAGTTATTGCCAGCACGGTCTTTATGAACTTCTTGAAAGGGTTGGCATGAGTGCTGATGCAGTTGCCAGAACAGGTGAAGCATTGGCGCTGTCAGAATTGTCTCTGAAATTCATTGCGCCTCTAAAAAGTGGAGATAAGTTTGTCGTAAAGGTCCGGATGACCAACTCCTCAGCCGCTCGCGTCTACTTTGAACACTTCATTTTCAAGCTGCCAAATCTAGAGGTTTGTCATTATCACTCTCTAATTATGCTGGCCCTTGACGCCGAATTACCTACTGATCATGGTATGGTTTCTAAACAGCCTATCTTGGAAGCAAAGGCCACAGCAGTGTGGCTTGATAAAGACTATCGCCCTGTACGTTTTCCATCTGAGGTGACATCTAAATTTGTGCAGTTTCGTCGCCATAAGGAGTCCAAAGGCGTCGTGCACAACGGCGTTGGTGCTGGAAGTCTTCATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

247

Amino Acids

27.39

Weight (kDa)

8.76

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 222	8.3e-16	Thioesterase-like superfamily
4HBT	PF03061	84 - 168	3.3e-11	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	2 cut(s)	124, 459
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	2 cut(s)	139, 453
AcsI	RAATTY	2 cut(s)	386, 662
AcyI	GRCGYC	3 cut(s)	255, 540, 699
AfaI	GTAC	1 cut(s)	636
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	24, 314, 470, 484
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	3 cut(s)	220, 241, 487
AluI	AGCT	3 cut(s)	220, 241, 487
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	2 cut(s)	131, 384
Alw44I	GTGCAC	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	432
AoxI	GGCC	2 cut(s)	531, 597
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	2 cut(s)	156, 487
ApoI	RAATTY	2 cut(s)	386, 662
AspLEI	GCGC	2 cut(s)	367, 397
AspS9I	GGNCC	2 cut(s)	430, 532
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	365, 664
AvaII	GGWCC	1 cut(s)	430
BaeGI	GKGCMC	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	708
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	168, 474
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	1 cut(s)	727
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BclI	TGATCA	2 cut(s)	244, 556
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	131, 384
BfaI	CTAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	3 cut(s)	157, 453, 488
BlsI	GCNGC	3 cut(s)	158, 454, 489
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	430, 532
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	150, 325
BpiI	GAAGAC	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	3 cut(s)	255, 540, 699
BsaWI	WCCGGW	3 cut(s)	40, 129, 432
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	432
BseGI	GGATG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	462, 639
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	2 cut(s)	168, 474
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	124, 459
BshFI	GGCC	2 cut(s)	533, 599
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	4 cut(s)	41, 130, 229, 433
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	131, 384
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	533, 599
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp13I	TCCGGA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	244, 556
BspACI	CCGC	2 cut(s)	139, 453
BspANI	GGCC	2 cut(s)	533, 599
BspCNI	CTCAG	2 cut(s)	461, 640
BspEI	TCCGGA	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	124, 459
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	390
BssMI	GATC	2 cut(s)	244, 556
BssNI	GRCGYC	3 cut(s)	255, 540, 699
Bst4CI	ACNGT	2 cut(s)	92, 296
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	3 cut(s)	255, 540, 699
BstC8I	GCNNGC	5 cut(s)	15, 172, 290, 457, 531
BstDEI	CTNAG	2 cut(s)	448, 648
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	2 cut(s)	124, 459
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	2 cut(s)	367, 397
BstKTI	GATC	2 cut(s)	247, 559
BstMAI	GTCTC	2 cut(s)	131, 384
BstMBI	GATC	2 cut(s)	244, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 539
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	708
BstUI	CGCG	2 cut(s)	124, 459
BstV1I	GCAGC	2 cut(s)	168, 474
BstV2I	GAAGAC	1 cut(s)	722
BsuRI	GGCC	2 cut(s)	533, 599
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	2 cut(s)	88, 612
Cac8I	GCNNGC	5 cut(s)	15, 172, 290, 457, 531
CfoI	GCGC	2 cut(s)	367, 397
Cfr13I	GGNCC	2 cut(s)	430, 532
CseI	GACGC	7 cut(s)	52, 113, 130, 244, 448, 548, 688
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	3 cut(s)	60, 325, 560
CviJI	RGCY	8 cut(s)	220, 241, 452, 487, 533, 580, 599, 613
CviKI_1	RGCY	8 cut(s)	220, 241, 452, 487, 533, 580, 599, 613
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	2 cut(s)	448, 648
DpnI	GATC	2 cut(s)	246, 558
DpnII	GATC	2 cut(s)	244, 556
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	63, 328, 563
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	59, 324, 559
FbaI	TGATCA	2 cut(s)	244, 556
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	157, 453, 488
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	3 cut(s)	157, 453, 488
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	2 cut(s)	366, 396
GluI	GCNGC	3 cut(s)	157, 453, 488
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	533, 599
HapII	CCGG	4 cut(s)	41, 130, 229, 433
HgaI	GACGC	7 cut(s)	52, 113, 130, 244, 448, 548, 688
HhaI	GCGC	2 cut(s)	367, 397
Hin1I	GRCGYC	3 cut(s)	255, 540, 699
Hin1II	CATG	3 cut(s)	63, 328, 563
Hin6I	GCGC	2 cut(s)	365, 395
HinP1I	GCGC	2 cut(s)	365, 395
HinfI	GANTC	1 cut(s)	689
HpaII	CCGG	4 cut(s)	41, 130, 229, 433
HphI	GGTGA	2 cut(s)	365, 664
Hpy166II	GTNNAC	3 cut(s)	262, 463, 706
Hpy188I	TCNGA	4 cut(s)	182, 373, 384, 649
Hpy188III	TCNNGA	5 cut(s)	29, 148, 311, 433, 497
Hpy8I	GTNNAC	3 cut(s)	262, 463, 706
Hpy99I	CGWCG	3 cut(s)	260, 681, 704
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	92, 296
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	7 cut(s)	13, 156, 170, 278, 338, 670, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 539
HpyF3I	CTNAG	2 cut(s)	448, 648
HpySE526I	ACGT	1 cut(s)	637
Hsp92I	GRCGYC	3 cut(s)	255, 540, 699
Hsp92II	CATG	3 cut(s)	63, 328, 563
HspAI	GCGC	2 cut(s)	365, 395
Kpn2I	TCCGGA	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	244, 556
Kzo9I	GATC	2 cut(s)	244, 556
Lsp1109I	GCAGC	2 cut(s)	168, 474
LweI	GCATC	2 cut(s)	150, 325
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	3 cut(s)	43, 132, 652
MalI	GATC	2 cut(s)	246, 558
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	244, 556
MboII	GAAGA	3 cut(s)	48, 77, 722
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	6 cut(s)	24, 374, 386, 522, 545, 662
MluI	ACGCGT	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	64, 176, 408, 457, 493, 643
MroI	TCCGGA	1 cut(s)	432
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	194, 605
MspI	CCGG	4 cut(s)	41, 130, 229, 433
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	124, 459
MwoI	GCNNNNNNNGC	2 cut(s)	275, 539
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	244, 556
NlaIII	CATG	3 cut(s)	63, 328, 563
NmuCI	GTSAC	2 cut(s)	132, 652
OliI	CACNNNNGTG	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	158, 454, 489
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PspEI	GGTNACC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	430, 532
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
RseI	CAYNNNNRTG	2 cut(s)	194, 605
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	157, 453, 488
Sau3AI	GATC	2 cut(s)	244, 556
Sau96I	GGNCC	2 cut(s)	430, 532
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	150, 325
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	2 cut(s)	194, 605
Sse9I	AATT	6 cut(s)	24, 374, 386, 522, 545, 662
SsiI	CCGC	2 cut(s)	139, 453
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	92, 296
TaiI	ACGT	1 cut(s)	640
TasI	AATT	6 cut(s)	24, 374, 386, 522, 545, 662
TauI	GCSGC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	95, 612
TseFI	GTSAC	2 cut(s)	132, 652
TseI	GCWGC	2 cut(s)	156, 487
Tsp45I	GTSAC	2 cut(s)	132, 652
TspDTI	ATGAA	6 cut(s)	48, 71, 318, 379, 466, 722
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	95, 612
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	2 cut(s)	386, 662
XbaI	TCTAGA	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.