Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

20064648 .. 20066272

Gene Structure 1625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTGAGGTTGCAGGCATTTTCAATGGCCGACTACAATCACGTGACCTTTCCCTCTCCATGCATCATTCCTACTTCACTCCATTCCCACCGTCAATCGGTATCTTTTCCCACCGCGCGGACACGTTTCCGATCACTCCCCACTGTCAGGATATGCAGCACTTGCGTTGCATGCGATATGGGAGGTCACTTAAGAATGAGTGGTTTTTGTGATGTTGAGCTTAAAGTACGAGACTATGAGCTTGATCAGTATAGCGTAGTTAACAATGCTGTCTATGCAAATTATTGCCAGCACGCTCTTAATGAACTTTTTGAAAGGGTTGGCCTAAGTCCTGATGCAGTTGCCCCAACCGGTGAAGCATTTGCCTTGTCAGCATCGTCTATGAAATTCATTGCACCTCTAAAGAGTGGAGACGAGTTTGTCATAAAGGTCAGGATGACTAACTCCTCAGCCGCTCGCGCGTACTTTGAGCTGTTCATTTTCAAGCTGCCAAATCTGGAGCCTATCTTGGAAGCAACTGCCACAGCAGTGTGGCTTGATAAGGACTATCGCCCTGTCCGTATTCCATCGGAGGTGATATCTACATTTGTCCAATTTCATCGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

203

Amino Acids

22.75

Weight (kDa)

7.67

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 193	1.6e-13	Thioesterase-like superfamily
4HBT	PF03061	85 - 165	1.3e-09	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	455
AccII	CGCG	4 cut(s)	116, 118, 459, 461
AciI	CCGC	3 cut(s)	114, 118, 453
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	386
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	228, 464
AfiI	CCNNNNNNNGG	3 cut(s)	97, 117, 147
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	24, 314, 484
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	220, 241, 472, 487
AluI	AGCT	4 cut(s)	220, 241, 472, 487
Alw26I	GTCTC	2 cut(s)	225, 405
AoxI	GGCC	2 cut(s)	27, 322
ApeKI	GCWGC	2 cut(s)	156, 487
ApoI	RAATTY	1 cut(s)	386
AsiGI	ACCGGT	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	118, 461
AsuHPI	GGTGA	2 cut(s)	365, 586
BbrPI	CACGTG	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	168, 474
BccI	CCATC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	225, 405
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	3 cut(s)	157, 453, 488
BlsI	GCNGC	3 cut(s)	158, 454, 489
BmiI	GGNNCC	1 cut(s)	501
BmsI	GCATC	3 cut(s)	72, 325, 383
BpmI	CTGGAG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 117, 147
Bse118I	RCCGGY	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	97, 117, 147
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	168, 474
Bsh1236I	CGCG	4 cut(s)	116, 118, 459, 461
BshFI	GGCC	2 cut(s)	29, 324
BshTI	ACCGGT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	97, 117, 147
BsmAI	GTCTC	2 cut(s)	225, 405
BsmBI	CGTCTC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	29, 324
Bsp143I	GATC	2 cut(s)	131, 244
BspACI	CCGC	3 cut(s)	114, 118, 453
BspANI	GGCC	2 cut(s)	29, 324
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	4 cut(s)	116, 118, 459, 461
BspLI	GGNNCC	1 cut(s)	501
BspTI	CTTAAG	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	2 cut(s)	131, 244
Bst4CI	ACNGT	2 cut(s)	92, 145
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	5 cut(s)	15, 172, 290, 294, 457
BstDEI	CTNAG	2 cut(s)	326, 448
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	4 cut(s)	116, 118, 459, 461
BstHHI	GCGC	2 cut(s)	118, 461
BstKTI	GATC	2 cut(s)	134, 247
BstMAI	GTCTC	2 cut(s)	225, 405
BstMBI	GATC	2 cut(s)	131, 244
BstMWI	GCNNNNNNNGC	5 cut(s)	162, 171, 275, 371, 458
BstNSI	RCATGY	1 cut(s)	174
BstUI	CGCG	4 cut(s)	116, 118, 459, 461
BstV1I	GCAGC	2 cut(s)	168, 474
BsuRI	GGCC	2 cut(s)	29, 324
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	141, 534
Cac8I	GCNNGC	5 cut(s)	15, 172, 290, 294, 457
CfoI	GCGC	2 cut(s)	118, 461
Cfr10I	RCCGGY	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	227, 463
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	2 cut(s)	60, 171
CviJI	RGCY	9 cut(s)	29, 220, 241, 324, 452, 472, 487, 502, 535
CviKI_1	RGCY	9 cut(s)	29, 220, 241, 324, 452, 472, 487, 502, 535
CviQI	GTAC	2 cut(s)	227, 463
DdeI	CTNAG	2 cut(s)	326, 448
DpnI	GATC	2 cut(s)	133, 246
DpnII	GATC	2 cut(s)	131, 244
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	579
Eco72I	CACGTG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	2 cut(s)	63, 174
FaiI	YATR	9 cut(s)	61, 154, 172, 179, 237, 252, 276, 383, 425
FatI	CATG	2 cut(s)	59, 170
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	157, 453, 488
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	3 cut(s)	157, 453, 488
GlaI	GCGC	2 cut(s)	117, 460
GluI	GCNGC	3 cut(s)	157, 453, 488
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	29, 324
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	118, 461
Hin1II	CATG	2 cut(s)	63, 174
Hin6I	GCGC	2 cut(s)	116, 459
HinP1I	GCGC	2 cut(s)	116, 459
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	365, 586
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	131, 571
Hpy188III	TCNNGA	4 cut(s)	148, 332, 433, 497
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	92, 145
HpyCH4IV	ACGT	2 cut(s)	42, 124
HpyCH4V	TGCA	7 cut(s)	13, 63, 156, 170, 278, 338, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	162, 171, 275, 371, 458
HpyF3I	CTNAG	2 cut(s)	326, 448
HpySE526I	ACGT	2 cut(s)	42, 124
Hsp92II	CATG	2 cut(s)	63, 174
HspAI	GCGC	2 cut(s)	116, 459
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	131, 244
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	7 cut(s)	133, 302, 345, 364, 418, 482, 567
Lsp1109I	GCAGC	2 cut(s)	168, 474
LweI	GCATC	3 cut(s)	72, 325, 383
MaeII	ACGT	2 cut(s)	42, 124
MaeIII	GTNAC	2 cut(s)	43, 185
MalI	GATC	2 cut(s)	133, 246
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	131, 244
MluCI	AATT	3 cut(s)	280, 386, 593
MnlI	CCTC	5 cut(s)	64, 176, 408, 457, 565
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	4 cut(s)	191, 222, 261, 300
MslI	CAYNNNNRTG	1 cut(s)	527
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	351
MvnI	CGCG	4 cut(s)	116, 118, 459, 461
MwoI	GCNNNNNNNGC	5 cut(s)	162, 171, 275, 371, 458
NdeII	GATC	2 cut(s)	131, 244
NlaIII	CATG	2 cut(s)	63, 174
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	2 cut(s)	43, 185
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	158, 454, 489
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	501
RsaI	GTAC	2 cut(s)	228, 464
RsaNI	GTAC	2 cut(s)	227, 463
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	191, 222, 261, 300
SatI	GCNGC	3 cut(s)	157, 453, 488
Sau3AI	GATC	2 cut(s)	131, 244
SfaNI	GCATC	3 cut(s)	72, 325, 383
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	3 cut(s)	280, 386, 593
SsiI	CCGC	3 cut(s)	114, 118, 453
TaaI	ACNGT	2 cut(s)	92, 145
TaiI	ACGT	2 cut(s)	45, 127
TasI	AATT	3 cut(s)	280, 386, 593
TauI	GCSGC	1 cut(s)	455
Tru1I	TTAA	4 cut(s)	191, 222, 261, 300
Tru9I	TTAA	4 cut(s)	191, 222, 261, 300
TscAI	CASTG	2 cut(s)	148, 534
TseFI	GTSAC	2 cut(s)	43, 185
TseI	GCWGC	2 cut(s)	156, 487
Tsp45I	GTSAC	2 cut(s)	43, 185
TspDTI	ATGAA	5 cut(s)	318, 379, 398, 466, 587
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	148, 534
Vha464I	CTTAAG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.