Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

25585774 .. 25587717

Gene Structure 1944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTCTTCAGGTTACCGGCACGGCGACTCCGGCTATGCCTGCGGTAGTGTTTCTCAATTCATGGAGACGACCACTTAGTATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCATTCTTCGATCTCAAAGGAGGCAAAGGAATGAGTGAGTTCCATGAGGTTGAACTCAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGACATGAGTTTCTAGAGAGTATCGGTATCAACTGCGACGAAGTAGCACGTTCTGGGGAAGCCTTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCGGAGACAAATTCGTGGTGAAAGCGAGGATATCGGGGACATCTGCTGCGCGTATTTACTTCGATCATTTCATCTTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAGCTGTGTGGCTCGACAACAAGTACCGTCCTGTTCGCATCCCATCTTCTATACGTTCTAAATTTGTTCACTTCCTACGCCAAGACGACGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

190

Amino Acids

21.54

Weight (kDa)

9.27

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	60 - 180	1.5e-18	Thioesterase-like superfamily
4HBT	PF03061	68 - 151	8.3e-13	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	2 cut(s)	44, 360
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	368, 536
AcyI	GRCGYC	1 cut(s)	564
AfaI	GTAC	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	109, 170
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw26I	GTCTC	2 cut(s)	61, 357
AlwI	GGATC	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	368, 536
AspLEI	GCGC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	339, 388
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	2 cut(s)	39, 551
BcoDI	GTCTC	2 cut(s)	61, 357
BfaI	CTAG	2 cut(s)	116, 263
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
BmsI	GCATC	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bse118I	RCCGGY	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	90
BseGI	GGATG	1 cut(s)	513
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	409
Bsh1285I	CGRYCG	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	18, 32, 91
BslFI	GGGAC	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	61, 357
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	127, 196, 421
BspACI	CCGC	2 cut(s)	44, 360
BspEI	TCCGGA	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	3 cut(s)	127, 196, 421
BssNI	GRCGYC	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	239, 248, 503
BstACI	GRCGYC	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	77, 313
BstEII	GGTNACC	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	130, 199, 424
BstMAI	GTCTC	2 cut(s)	61, 357
BstMBI	GATC	3 cut(s)	127, 196, 421
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 227
BstPI	GGTNACC	1 cut(s)	13
BstSNI	TACGTA	1 cut(s)	356
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	63, 161, 254
CviJI	RGCY	6 cut(s)	35, 112, 311, 454, 479, 487
CviKI_1	RGCY	6 cut(s)	35, 112, 311, 454, 479, 487
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	77, 313
DpnI	GATC	3 cut(s)	129, 198, 423
DpnII	GATC	3 cut(s)	127, 196, 421
DraI	TTTAAA	1 cut(s)	436
Eco105I	TACGTA	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	66, 164, 257
FaiI	YATR	7 cut(s)	38, 64, 162, 189, 255, 458, 527
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	62, 160, 253
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	2 cut(s)	116, 263
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	405
HapII	CCGG	3 cut(s)	18, 32, 91
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	3 cut(s)	66, 164, 257
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	3 cut(s)	242, 251, 330
HindII	GTYRAC	3 cut(s)	242, 251, 330
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	18, 32, 91
HphI	GGTGA	2 cut(s)	339, 388
Hpy166II	GTNNAC	6 cut(s)	214, 226, 242, 251, 330, 544
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	91, 182, 263, 449
Hpy8I	GTNNAC	6 cut(s)	214, 226, 242, 251, 330, 544
Hpy99I	CGWCG	2 cut(s)	290, 566
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	3 cut(s)	239, 248, 503
HpyCH4IV	ACGT	3 cut(s)	298, 355, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 227
HpyF3I	CTNAG	2 cut(s)	77, 313
HpySE526I	ACGT	3 cut(s)	298, 355, 529
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	3 cut(s)	66, 164, 257
HspAI	GCGC	1 cut(s)	407
Kpn2I	TCCGGA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	127, 196, 421
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	6 cut(s)	31, 45, 54, 104, 288, 519
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	116, 263
MaeII	ACGT	3 cut(s)	298, 355, 529
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	129, 198, 423
MboI	GATC	3 cut(s)	127, 196, 421
MboII	GAAGA	2 cut(s)	115, 513
MluCI	AATT	5 cut(s)	58, 191, 318, 368, 536
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	96, 123, 131, 157, 378, 457
MroI	TCCGGA	1 cut(s)	90
MseI	TTAA	1 cut(s)	435
MspI	CCGG	3 cut(s)	18, 32, 91
Mva1269I	GAATGC	1 cut(s)	119
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 227
NdeII	GATC	3 cut(s)	127, 196, 421
NlaIII	CATG	3 cut(s)	66, 164, 257
PctI	GAATGC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	127, 196, 421
SchI	GAGTC	1 cut(s)	22
SetI	ASST	8 cut(s)	15, 107, 168, 301, 352, 358, 481, 532
SfaNI	GCATC	1 cut(s)	522
SnaBI	TACGTA	1 cut(s)	356
Sse9I	AATT	5 cut(s)	58, 191, 318, 368, 536
SsiI	CCGC	2 cut(s)	44, 360
SspMI	CTAG	2 cut(s)	116, 263
TaaI	ACNGT	3 cut(s)	239, 248, 503
TaiI	ACGT	3 cut(s)	301, 358, 532
TaqI	TCGA	4 cut(s)	126, 250, 420, 489
TasI	AATT	5 cut(s)	58, 191, 318, 368, 536
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	51, 204, 350, 418
XapI	RAATTY	2 cut(s)	368, 536
XbaI	TCTAGA	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	2 cut(s)	116, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.