Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

61639709 .. 61641275

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG359000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTGAGTTTGCAGGCATTTCCAATTGCCGACGCCTCTCACGCGACCTTTCCCCCCTCACGTGCCTTCCCTTTTTCGTCACTCCATCTCCACCGCCGGTCAGTCTCTTTTCCGACCACGCGGCCACGTGTCCGACCATTCCCCCCCACCTTCCGAAAATGCACCAGTACTTGTCTCGCATTCGATTTCAAAAGTGGCAAAGGAATGAGTGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTTAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATGAACTTCTGGAAAGGGTTGGCATGAGCGCTGATGCGGTTGCCCGTACTGGTGATGCACTAGCATTGTCAGAATTGTCTCTCAAATTCATTGCGCCTCTAAGAAGTGGAGACAAGTTTGTCATAAAGGTGAGGGTGGCCAACTCTTCAGCTGCTCGCTTGTATTTTGATCACTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACTGCAGTGTGGCTTGATAAAAACTATCGCCCTATCCGTATTCCGCCGGAGGTGAGATCTAAAATTGTTCAATTTCTTCGCCATGAGGAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

209

Amino Acids

23.64

Weight (kDa)

9.71

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	79 - 198	4.3e-17	Thioesterase-like superfamily
4HBT	PF03061	87 - 168	3.4e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AccII	CGCG	3 cut(s)	44, 121, 240
AciI	CCGC	5 cut(s)	94, 121, 238, 347, 575
AcoI	YGGCCR	2 cut(s)	122, 447
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	441
AcvI	CACGTG	2 cut(s)	62, 128
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	169, 358
AfeI	AGCGCT	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	190, 493, 602
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	4 cut(s)	229, 250, 461, 496
AluI	AGCT	4 cut(s)	229, 250, 461, 496
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	4 cut(s)	109, 179, 393, 414
Aor51HI	AGCGCT	1 cut(s)	340
AoxI	GGCC	3 cut(s)	122, 447, 528
ApeKI	GCWGC	2 cut(s)	461, 496
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	341, 406
AsuHPI	GGTGA	3 cut(s)	374, 451, 595
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	231
BbrPI	CACGTG	2 cut(s)	62, 128
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	448, 483
BccI	CCATC	1 cut(s)	93
BclI	TGATCA	2 cut(s)	253, 478
BcoDI	GTCTC	4 cut(s)	109, 179, 393, 414
BfaI	CTAG	2 cut(s)	371, 506
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	342
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	122, 462, 497
BlsI	GCNGC	3 cut(s)	123, 463, 498
BmcAI	AGTACT	1 cut(s)	169
BmsI	GCATC	2 cut(s)	334, 355
BsaAI	YACGTR	2 cut(s)	62, 128
BsaHI	GRCGYC	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	165, 364
Bse3DI	GCAATG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	165, 364
BseXI	GCAGC	2 cut(s)	448, 483
Bsh1236I	CGCG	3 cut(s)	44, 121, 240
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	3 cut(s)	124, 449, 530
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	97, 578
BsmAI	GTCTC	4 cut(s)	109, 179, 393, 414
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	124, 449, 530
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	253, 478, 587
BspACI	CCGC	5 cut(s)	94, 121, 238, 347, 575
BspANI	GGCC	3 cut(s)	124, 449, 530
BspFNI	CGCG	3 cut(s)	44, 121, 240
BspHI	TCATGA	2 cut(s)	217, 310
BspMAI	CTGCAG	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	165, 364
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	3 cut(s)	253, 478, 587
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	2 cut(s)	62, 128
BstC8I	GCNNGC	3 cut(s)	15, 299, 466
BstDEI	CTNAG	1 cut(s)	410
BstFNI	CGCG	3 cut(s)	44, 121, 240
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	341, 406
BstKTI	GATC	3 cut(s)	256, 481, 590
BstMAI	GTCTC	4 cut(s)	109, 179, 393, 414
BstMBI	GATC	3 cut(s)	253, 478, 587
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 284
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	3 cut(s)	44, 121, 240
BstV1I	GCAGC	2 cut(s)	448, 483
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	124, 449, 530
BtsI	GCAGTG	2 cut(s)	531, 543
BtsIMutI	CAGTG	2 cut(s)	531, 543
Cac8I	GCNNGC	3 cut(s)	15, 299, 466
CciI	TCATGA	2 cut(s)	217, 310
CfoI	GCGC	2 cut(s)	341, 406
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	168, 357
CviAII	CATG	4 cut(s)	218, 311, 334, 614
CviJI	RGCY	9 cut(s)	124, 229, 250, 449, 461, 496, 511, 530, 544
CviKI_1	RGCY	9 cut(s)	124, 229, 250, 449, 461, 496, 511, 530, 544
CviQI	GTAC	2 cut(s)	168, 357
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	3 cut(s)	255, 480, 589
DpnII	GATC	3 cut(s)	253, 478, 587
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	122, 447
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	1 cut(s)	564
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	441
Eco72I	CACGTG	2 cut(s)	62, 128
EcoICRI	GAGCTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	4 cut(s)	221, 314, 337, 617
FaiI	YATR	6 cut(s)	219, 261, 312, 335, 434, 615
FatI	CATG	4 cut(s)	217, 310, 333, 613
FbaI	TGATCA	2 cut(s)	253, 478
Fnu4HI	GCNGC	3 cut(s)	122, 462, 497
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	122, 462, 497
FspBI	CTAG	2 cut(s)	371, 506
GlaI	GCGC	2 cut(s)	340, 405
GluI	GCNGC	3 cut(s)	122, 462, 497
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	124, 449, 530
HapII	CCGG	2 cut(s)	97, 578
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	341, 406
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	221, 314, 337, 617
Hin6I	GCGC	2 cut(s)	339, 404
HinP1I	GCGC	2 cut(s)	339, 404
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	620
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	97, 578
HphI	GGTGA	3 cut(s)	374, 451, 595
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	114, 134, 155, 382
Hpy188III	TCNNGA	4 cut(s)	218, 311, 320, 506
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	76, 160
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	61, 127
HpyCH4V	TGCA	5 cut(s)	13, 162, 287, 368, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 284
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	61, 127
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	221, 314, 337, 617
HspAI	GCGC	2 cut(s)	339, 404
Ksp22I	TGATCA	2 cut(s)	253, 478
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	253, 478, 587
LpnPI	CCDG	6 cut(s)	110, 178, 305, 311, 345, 591
Lsp1109I	GCAGC	2 cut(s)	448, 483
LweI	GCATC	2 cut(s)	334, 355
MaeI	CTAG	2 cut(s)	371, 506
MaeII	ACGT	2 cut(s)	61, 127
MaeIII	GTNAC	2 cut(s)	78, 290
MalI	GATC	3 cut(s)	255, 480, 589
MboI	GATC	3 cut(s)	253, 478, 587
MboII	GAAGA	2 cut(s)	447, 599
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	5 cut(s)	24, 383, 395, 594, 602
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	2 cut(s)	137, 157
MnlI	CCTC	6 cut(s)	46, 67, 417, 435, 574, 610
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	437, 536
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	97, 578
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	179
MvnI	CGCG	3 cut(s)	44, 121, 240
MwoI	GCNNNNNNNGC	2 cut(s)	41, 284
NdeII	GATC	3 cut(s)	253, 478, 587
NlaIII	CATG	4 cut(s)	221, 314, 337, 617
NmuCI	GTSAC	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	536
PagI	TCATGA	2 cut(s)	217, 310
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PctI	GAATGC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	123, 463, 498
PleI	GAGTC	1 cut(s)	628
PmaCI	CACGTG	2 cut(s)	62, 128
PmlI	CACGTG	2 cut(s)	62, 128
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	2 cut(s)	62, 128
Psp124BI	GAGCTC	1 cut(s)	231
PspCI	CACGTG	2 cut(s)	62, 128
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	169, 358
RsaNI	GTAC	2 cut(s)	168, 357
RseI	CAYNNNNRTG	2 cut(s)	437, 536
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	122, 462, 497
Sau3AI	GATC	3 cut(s)	253, 478, 587
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	334, 355
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	2 cut(s)	437, 536
Sse9I	AATT	5 cut(s)	24, 383, 395, 594, 602
SsiI	CCGC	5 cut(s)	94, 121, 238, 347, 575
SspMI	CTAG	2 cut(s)	371, 506
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	2 cut(s)	64, 130
TaqI	TCGA	1 cut(s)	183
TasI	AATT	5 cut(s)	24, 383, 395, 594, 602
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	538, 543
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	461, 496
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	4 cut(s)	206, 327, 388, 475
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	538, 543
XapI	RAATTY	1 cut(s)	395
XbaI	TCTAGA	1 cut(s)	505
XspI	CTAG	2 cut(s)	371, 506
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.