Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

64555246 .. 64569526

Gene Structure 14281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG336600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTCTCTCTCTCTCTAGAGCAGAGCAGAGTAGCAGCACTGAGCTCAGCGGCAGTAGAGATGTTGAGTTTGCAGCAGGCATTTCCAATTGCCGACGCCTCTCACGCCACCTTTCCCCCCTCACGTGCCATCCCTTCGTCACTCCATCTCCACCGCCGGTCAGTCTCTTTTCCGACCACACCGTCACGTGTCCGATCATTCCCCACCTTCCGGAAATGCACCACTTGTCTCGCATTCGATTTCAAAAGTGGCAAAGGAATGAGTGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTTAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATGAACTTCTGGAAAGGGTTGGCATGAGCGCTGATGCGGTTGCCCGTACTGGTGATGCACTAGCATTGTCAGAATTGTCTCTCAAATTCATTGCGCCTCTAAGAAGTGGAGACAAGTTTGTCATAAAGGTCGGGATGACCCACTCCTCAGCAGCTCGCGTGTACTTTGATCAGTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACAGCAGTGTGGCTTGATAAAGGCTATCGCCCAGTCCGTATTCCATCGGAGGTGACATCTAAATTTGTCCAGTTTCGTCGCCATAAGGAGTCTAACGGTGTCCTGCACAACGGAGTTGGTCCCAGGGAAAGTCTTCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

242

Amino Acids

26.9

Weight (kDa)

9.64

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	97 - 217	2.8e-15	Thioesterase-like superfamily
4HBT	PF03061	105 - 186	8.1e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	181, 482
AccII	CGCG	2 cut(s)	294, 522
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	4 cut(s)	50, 154, 292, 401
AcsI	RAATTY	2 cut(s)	449, 647
AcvI	CACGTG	2 cut(s)	125, 188
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	412, 527
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	244, 547
AjnI	CCWGG	1 cut(s)	707
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	5 cut(s)	45, 283, 304, 518, 550
AluI	AGCT	5 cut(s)	45, 283, 304, 518, 550
Alw21I	GWGCWC	2 cut(s)	47, 285
Alw26I	GTCTC	4 cut(s)	169, 233, 447, 468
Aor13HI	TCCGGA	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	1 cut(s)	582
ApeKI	GCWGC	4 cut(s)	35, 73, 515, 550
ApoI	RAATTY	2 cut(s)	449, 647
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	2 cut(s)	395, 460
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	428, 649
AvaII	GGWCC	1 cut(s)	704
BanII	GRGCYC	2 cut(s)	47, 285
BbrPI	CACGTG	2 cut(s)	125, 188
BbsI	GAAGAC	1 cut(s)	710
Bbv12I	GWGCWC	2 cut(s)	47, 285
BbvCI	CCTCAGC	1 cut(s)	511
BbvI	GCAGC	4 cut(s)	47, 85, 527, 537
BccI	CCATC	3 cut(s)	137, 153, 637
BciT130I	CCWGG	1 cut(s)	709
BclI	TGATCA	2 cut(s)	307, 532
BcoDI	GTCTC	4 cut(s)	169, 233, 447, 468
BfaI	CTAG	3 cut(s)	17, 425, 560
BfoI	RGCGCY	1 cut(s)	396
BisI	GCNGC	5 cut(s)	36, 51, 74, 516, 551
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	5 cut(s)	37, 52, 75, 517, 552
Bme1390I	CCNGG	1 cut(s)	709
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	1 cut(s)	709
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	2 cut(s)	388, 409
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	511
Bpu1102I	GCTNAGC	1 cut(s)	46
BsaAI	YACGTR	2 cut(s)	125, 188
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	707, 708
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	3 cut(s)	418, 617, 655
Bse3DI	GCAATG	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	709
BseDI	CCNNGG	2 cut(s)	707, 708
BseGI	GGATG	2 cut(s)	129, 504
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	32, 60, 525
BseNI	ACTGG	3 cut(s)	418, 617, 655
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	4 cut(s)	47, 85, 527, 537
BsgI	GTGCAG	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	294, 522
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	584
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	47, 285
BsiSI	CCGG	2 cut(s)	157, 211
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	4 cut(s)	169, 233, 447, 468
BsmFI	GGGAC	1 cut(s)	690
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	47, 285
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	194, 307, 532
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	4 cut(s)	50, 154, 292, 401
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	3 cut(s)	33, 59, 524
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	294, 522
BspHI	TCATGA	2 cut(s)	271, 364
BspLI	GGNNCC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	418, 617, 655
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	707, 708
BssMI	GATC	3 cut(s)	194, 307, 532
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	3 cut(s)	183, 359, 683
BstACI	GRCGYC	1 cut(s)	96
BstBAI	YACGTR	2 cut(s)	125, 188
BstC8I	GCNNGC	3 cut(s)	78, 353, 520
BstDEI	CTNAG	4 cut(s)	41, 46, 464, 511
BstF5I	GGATG	2 cut(s)	129, 504
BstFNI	CGCG	2 cut(s)	294, 522
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	395, 460
BstKTI	GATC	3 cut(s)	197, 310, 535
BstMAI	GTCTC	4 cut(s)	169, 233, 447, 468
BstMBI	GATC	3 cut(s)	194, 307, 532
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 338
BstNI	CCWGG	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	707
BstUI	CGCG	2 cut(s)	294, 522
BstV1I	GCAGC	4 cut(s)	47, 85, 527, 537
BstV2I	GAAGAC	1 cut(s)	710
BsuRI	GGCC	1 cut(s)	584
BtsCI	GGATG	2 cut(s)	129, 504
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	38, 597
Cac8I	GCNNGC	3 cut(s)	78, 353, 520
CciI	TCATGA	2 cut(s)	271, 364
CfoI	GCGC	2 cut(s)	395, 460
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	411, 526
CviAII	CATG	3 cut(s)	272, 365, 388
CviJI	RGCY	9 cut(s)	45, 283, 304, 518, 550, 565, 584, 598, 609
CviKI_1	RGCY	9 cut(s)	45, 283, 304, 518, 550, 565, 584, 598, 609
CviQI	GTAC	2 cut(s)	411, 526
DdeI	CTNAG	4 cut(s)	41, 46, 464, 511
DpnI	GATC	3 cut(s)	196, 309, 534
DpnII	GATC	3 cut(s)	194, 307, 532
DrdI	GACNNNNNNGTC	2 cut(s)	181, 482
DseDI	GACNNNNNNGTC	2 cut(s)	181, 482
Ecl136II	GAGCTC	2 cut(s)	45, 283
Eco24I	GRGCYC	2 cut(s)	47, 285
Eco47I	GGWCC	1 cut(s)	704
Eco47III	AGCGCT	1 cut(s)	394
Eco53kI	GAGCTC	2 cut(s)	45, 283
Eco72I	CACGTG	2 cut(s)	125, 188
EcoICRI	GAGCTC	2 cut(s)	45, 283
EcoRII	CCWGG	1 cut(s)	707
EcoT38I	GRGCYC	2 cut(s)	47, 285
FaeI	CATG	3 cut(s)	275, 368, 391
FaiI	YATR	6 cut(s)	273, 315, 366, 389, 488, 669
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	3 cut(s)	271, 364, 387
FbaI	TGATCA	2 cut(s)	307, 532
Fnu4HI	GCNGC	5 cut(s)	36, 51, 74, 516, 551
FokI	GGATG	2 cut(s)	116, 511
FriOI	GRGCYC	2 cut(s)	47, 285
Fsp4HI	GCNGC	5 cut(s)	36, 51, 74, 516, 551
FspBI	CTAG	3 cut(s)	17, 425, 560
GlaI	GCGC	2 cut(s)	394, 459
GluI	GCNGC	5 cut(s)	36, 51, 74, 516, 551
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	2 cut(s)	157, 211
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	395, 460
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	275, 368, 391
Hin6I	GCGC	2 cut(s)	393, 458
HinP1I	GCGC	2 cut(s)	393, 458
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	674
HpaI	GTTAAC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	157, 211
HphI	GGTGA	2 cut(s)	428, 649
Hpy166II	GTNNAC	2 cut(s)	325, 526
Hpy188I	TCNGA	4 cut(s)	174, 194, 436, 634
Hpy188III	TCNNGA	7 cut(s)	17, 211, 272, 365, 374, 496, 560
Hpy8I	GTNNAC	2 cut(s)	325, 526
Hpy99I	CGWCG	2 cut(s)	98, 666
HpyAV	CCTTC	2 cut(s)	144, 217
HpyCH4III	ACNGT	3 cut(s)	183, 359, 683
HpyCH4IV	ACGT	2 cut(s)	124, 187
HpyCH4V	TGCA	5 cut(s)	73, 219, 341, 422, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 338
HpyF3I	CTNAG	4 cut(s)	41, 46, 464, 511
HpySE526I	ACGT	2 cut(s)	124, 187
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	275, 368, 391
HspAI	GCGC	2 cut(s)	393, 458
Kpn2I	TCCGGA	1 cut(s)	210
Ksp22I	TGATCA	2 cut(s)	307, 532
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	194, 307, 532
Lsp1109I	GCAGC	4 cut(s)	47, 85, 527, 537
LweI	GCATC	2 cut(s)	388, 409
MaeI	CTAG	3 cut(s)	17, 425, 560
MaeII	ACGT	2 cut(s)	124, 187
MaeIII	GTNAC	5 cut(s)	138, 183, 344, 637, 722
MalI	GATC	3 cut(s)	196, 309, 534
MboI	GATC	3 cut(s)	194, 307, 532
MboII	GAAGA	1 cut(s)	710
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	47, 285
MluCI	AATT	4 cut(s)	87, 437, 449, 647
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	109, 130, 471, 520, 628
MroI	TCCGGA	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	157, 211
MspR9I	CCNGG	1 cut(s)	709
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	709
MvnI	CGCG	2 cut(s)	294, 522
MwoI	GCNNNNNNNGC	2 cut(s)	104, 338
NdeII	GATC	3 cut(s)	194, 307, 532
NlaIII	CATG	3 cut(s)	275, 368, 391
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	3 cut(s)	138, 183, 637
OliI	CACNNNNGTG	1 cut(s)	590
PagI	TCATGA	2 cut(s)	271, 364
PasI	CCCWGGG	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PctI	GAATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	717
PkrI	GCNGC	5 cut(s)	37, 52, 75, 517, 552
PleI	GAGTC	1 cut(s)	682
PmaCI	CACGTG	2 cut(s)	125, 188
PmlI	CACGTG	2 cut(s)	125, 188
PpsI	GAGTC	1 cut(s)	682
Ppu21I	YACGTR	2 cut(s)	125, 188
Psp124BI	GAGCTC	2 cut(s)	47, 285
Psp6I	CCWGG	1 cut(s)	707
PspCI	CACGTG	2 cut(s)	125, 188
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	1 cut(s)	706
PspPI	GGNCC	1 cut(s)	704
RsaI	GTAC	2 cut(s)	412, 527
RsaNI	GTAC	2 cut(s)	411, 526
RseI	CAYNNNNRTG	1 cut(s)	590
SacI	GAGCTC	2 cut(s)	47, 285
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	5 cut(s)	36, 51, 74, 516, 551
Sau3AI	GATC	3 cut(s)	194, 307, 532
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	709
SduI	GDGCHC	2 cut(s)	47, 285
SfaNI	GCATC	2 cut(s)	388, 409
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	87, 437, 449, 647
SsiI	CCGC	4 cut(s)	50, 154, 292, 401
SspMI	CTAG	3 cut(s)	17, 425, 560
SstI	GAGCTC	2 cut(s)	47, 285
StyD4I	CCNGG	1 cut(s)	707
TaaI	ACNGT	3 cut(s)	183, 359, 683
TaiI	ACGT	2 cut(s)	127, 190
TaqI	TCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	87, 437, 449, 647
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	45, 597
TseFI	GTSAC	3 cut(s)	138, 183, 637
TseI	GCWGC	4 cut(s)	35, 73, 515, 550
Tsp45I	GTSAC	3 cut(s)	138, 183, 637
TspDTI	ATGAA	4 cut(s)	260, 381, 442, 529
TspGWI	ACGGA	2 cut(s)	611, 711
TspRI	CASTG	2 cut(s)	45, 597
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	2 cut(s)	449, 647
XbaI	TCTAGA	2 cut(s)	16, 559
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	3 cut(s)	17, 425, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.