Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

48329060 .. 48331186

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTGAGGTTGCAGGCATTTTCAACGGCCGACTACAATCACGTGACCTTTCCCTCATGCGTCATTCCTACTTCATTCCATTCCCACCGTCAATCGGTATCTTTTCCAACCATGCGGCCATGTTTCCGATCAGTCCCCACTGTCAGGATATGCAGCACTTCCGTTGCATGCGATATGGGAGGTCGCTTAAGAATGAGTGGTTTTTATGGTGTTGAGCTTAAAGTCCGAGACTATGAGCTTGATCACTATGGCGTAGTTAATAATGCTGTCTATGCTAATTATTGCCAGCTCGCTTTTGACGAATATTTAGAAAGGGTTGGCCCGAGTGCTGATGCAGTTGCCCAAACCGGTGGAGCAATTGCGTTGGCAGCATTGTCTCTGAAATTCATTGCGCCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGTTGCGGATGACCAACTCCTCAGCCGCTCGCCTGTACTTTGAGCAATTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTCGAAGGAACGGCCACAGTAGTGTGGCTTAATAAAGACTATCGCCCTGCCCGTATTCCATCAGAGGTGATATCTAAATTCGTCCAGTTTGGTCGCCGTAAGGAGTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

205

Amino Acids

23.0

Weight (kDa)

9.26

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	75 - 194	1.4e-16	Thioesterase-like superfamily
4HBT	PF03061	83 - 164	1.1e-09	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	452
AciI	CCGC	3 cut(s)	115, 430, 450
AcoI	YGGCCR	3 cut(s)	27, 116, 516
AcsI	RAATTY	2 cut(s)	383, 581
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	94, 144
AflII	CTTAAG	1 cut(s)	187
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	24, 481
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	5 cut(s)	217, 238, 289, 484, 615
AluI	AGCT	5 cut(s)	217, 238, 289, 484, 615
Alw26I	GTCTC	3 cut(s)	222, 381, 402
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	4 cut(s)	27, 116, 319, 516
ApeKI	GCWGC	3 cut(s)	153, 368, 484
ApoI	RAATTY	2 cut(s)	383, 581
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	322
BbrPI	CACGTG	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	165, 380, 471
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	3 cut(s)	42, 531, 585
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	222, 381, 402
BfaI	CTAG	2 cut(s)	494, 612
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	5 cut(s)	116, 154, 369, 450, 485
BlsI	GCNGC	5 cut(s)	117, 155, 370, 451, 486
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	320
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 144
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	94, 144
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	433
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	165, 380, 471
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	4 cut(s)	29, 118, 321, 518
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	94, 144
BsmAI	GTCTC	3 cut(s)	222, 381, 402
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	29, 118, 321, 518
BsoBI	CYCGRG	1 cut(s)	322
Bsp119I	TTCGAA	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	128, 241
BspACI	CCGC	3 cut(s)	115, 430, 450
BspANI	GGCC	4 cut(s)	29, 118, 321, 518
BspCNI	CTCAG	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	507
BspTI	CTTAAG	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	347
BssMI	GATC	2 cut(s)	128, 241
Bst4CI	ACNGT	3 cut(s)	89, 142, 523
BstAFI	CTTAAG	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	5 cut(s)	15, 169, 287, 291, 454
BstDEI	CTNAG	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	2 cut(s)	131, 244
BstMAI	GTCTC	3 cut(s)	222, 381, 402
BstMBI	GATC	2 cut(s)	128, 241
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 368
BstNSI	RCATGY	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	165, 380, 471
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	29, 118, 321, 518
BtsCI	GGATG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	5 cut(s)	15, 169, 287, 291, 454
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	4 cut(s)	57, 112, 120, 168
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	445
DpnI	GATC	2 cut(s)	130, 243
DpnII	GATC	2 cut(s)	128, 241
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	3 cut(s)	27, 116, 516
EagI	CGGCCG	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	576
FaeI	CATG	4 cut(s)	60, 115, 123, 171
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	56, 111, 119, 167
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	5 cut(s)	116, 154, 369, 450, 485
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	5 cut(s)	116, 154, 369, 450, 485
FspBI	CTAG	2 cut(s)	494, 612
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	5 cut(s)	116, 154, 369, 450, 485
HaeIII	GGCC	4 cut(s)	29, 118, 321, 518
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	4 cut(s)	60, 115, 123, 171
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	608
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	128, 227, 381, 568
Hpy188III	TCNNGA	2 cut(s)	145, 494
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	3 cut(s)	89, 142, 523
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	13, 153, 167, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 368
HpyF3I	CTNAG	1 cut(s)	445
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	60, 115, 123, 171
HspAI	GCGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	128, 241
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	130, 299, 361, 470, 564, 602
Lsp1109I	GCAGC	3 cut(s)	165, 380, 471
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	494, 612
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	130, 243
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	2 cut(s)	128, 241
MboII	GAAGA	1 cut(s)	496
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	5 cut(s)	277, 357, 383, 470, 581
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	64, 173, 405, 454, 562
MseI	TTAA	4 cut(s)	188, 219, 258, 534
MslI	CAYNNNNRTG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	272, 368
NdeII	GATC	2 cut(s)	128, 241
NlaIII	CATG	4 cut(s)	60, 115, 123, 171
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	524
PaeI	GCATGC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 553
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	117, 155, 370, 451, 486
PleI	GAGTC	1 cut(s)	616
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	616
Ppu21I	YACGTR	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	188, 219, 258, 534
SatI	GCNGC	5 cut(s)	116, 154, 369, 450, 485
Sau3AI	GATC	2 cut(s)	128, 241
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	617
SfaNI	GCATC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	5 cut(s)	277, 357, 383, 470, 581
SsiI	CCGC	3 cut(s)	115, 430, 450
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	494, 612
TaaI	ACNGT	3 cut(s)	89, 142, 523
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	507
TasI	AATT	5 cut(s)	277, 357, 383, 470, 581
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	118, 452
Tru1I	TTAA	4 cut(s)	188, 219, 258, 534
Tru9I	TTAA	4 cut(s)	188, 219, 258, 534
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	153, 368, 484
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	63, 376, 463
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	187
XapI	RAATTY	2 cut(s)	383, 581
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	171
XspI	CTAG	2 cut(s)	494, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.