Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

21464786 .. 21469781

Gene Structure 4996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTGAGGTTGCAGGCATTCTCAATTGCCGACTACAATCACTTGACCTTTCCCTCCTCATGCGTCATTCCTACTTCACTCCATTCCCACCGTCGATCGATATCTTTTCCAACCACACGGACAGGTTTCCGATCACTCCCCGCTGTCAAGATAGTTAGCACTTCCATTGCATGCGATATGGGAGGTCGATTAAGAATGAGTGGTTTTTATGATGCTGAGCTTAAAGTACGACACTATGAGCTTGATCAGTATAGTGTAGTTAACAATGCTGTCTATGCAAATTATTGCCAGCAGGCTCTTAAGGAACTTTTTGAAAGGGTTGGCCTAAATCCCGATGCAACTGCCGAAACCGGTGAAGCATTTGCGTTGTCAACATCGTCTATGAAATTCATTGCACCTCTAAAGAGTGGAGACGAGTTTGTCATAAAGGTCAGGATGACTAATGCCTCAGCCACTCGCCTGTACTTTGAGCACTTCATTTTCAAGCTGCCAAATCTGGAGCCAATCTTGGAAGCAACAGCCACAGTAGTGTGGCTTAATAAGGACTATCGCCCTGTCCGTATTCCATCGGAGGTGATATCTAAATTTGTCCAGTTTCGTCGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

202

Amino Acids

22.95

Weight (kDa)

9.32

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 195	2.6e-14	Thioesterase-like superfamily
4HBT	PF03061	85 - 165	8.8e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AciI	CCGC	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	386, 584
AfaI	GTAC	2 cut(s)	228, 464
AflII	CTTAAG	1 cut(s)	299
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	314, 484
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	220, 241, 487
AluI	AGCT	3 cut(s)	220, 241, 487
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	2 cut(s)	386, 584
AsiGI	ACCGGT	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	365, 586
Bbv12I	GWGCWC	1 cut(s)	474
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	1 cut(s)	574
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	488
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	501
BmsI	GCATC	2 cut(s)	202, 325
BpmI	CTGGAG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	448
Bpu1102I	GCTNAGC	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	2 cut(s)	165, 390
Bse8I	GATNNNNATC	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	98
BseGI	GGATG	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	100
BseMI	GCAATG	2 cut(s)	165, 390
BseMII	CTCAG	2 cut(s)	207, 462
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	405
BsmBI	CGTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	95, 131, 244
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	208, 461
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	501
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	2 cut(s)	165, 390
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	3 cut(s)	95, 131, 244
Bst4CI	ACNGT	2 cut(s)	92, 526
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	15, 172, 290, 294
BstDEI	CTNAG	2 cut(s)	216, 448
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	3 cut(s)	98, 134, 247
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	3 cut(s)	95, 131, 244
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	441
Cac8I	GCNNGC	4 cut(s)	15, 172, 290, 294
Cfr10I	RCCGGY	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	98
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	227, 463
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	2 cut(s)	60, 171
CviJI	RGCY	9 cut(s)	220, 241, 296, 324, 452, 487, 502, 521, 535
CviKI_1	RGCY	9 cut(s)	220, 241, 296, 324, 452, 487, 502, 521, 535
CviQI	GTAC	2 cut(s)	227, 463
DdeI	CTNAG	2 cut(s)	216, 448
DpnI	GATC	3 cut(s)	97, 133, 246
DpnII	GATC	3 cut(s)	95, 131, 244
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eco32I	GATATC	2 cut(s)	102, 579
EcoRV	GATATC	2 cut(s)	102, 579
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	2 cut(s)	63, 174
FaiI	YATR	9 cut(s)	61, 172, 179, 210, 237, 252, 276, 383, 425
FatI	CATG	2 cut(s)	59, 170
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	1 cut(s)	488
GluI	GCNGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	63, 174
HincII	GTYRAC	2 cut(s)	262, 372
HindII	GTYRAC	2 cut(s)	262, 372
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	365, 586
Hpy166II	GTNNAC	2 cut(s)	262, 372
Hpy188I	TCNGA	2 cut(s)	131, 571
Hpy188III	TCNNGA	4 cut(s)	148, 332, 433, 497
Hpy8I	GTNNAC	2 cut(s)	262, 372
Hpy99I	CGWCG	2 cut(s)	96, 603
HpyCH4III	ACNGT	2 cut(s)	92, 526
HpyCH4V	TGCA	5 cut(s)	13, 170, 278, 338, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	216, 448
Hsp92II	CATG	2 cut(s)	63, 174
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	95, 131, 244
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	9 cut(s)	108, 278, 302, 364, 418, 473, 482, 567, 605
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	2 cut(s)	202, 325
MalI	GATC	3 cut(s)	97, 133, 246
MboI	GATC	3 cut(s)	95, 131, 244
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	4 cut(s)	24, 280, 386, 584
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	64, 67, 176, 408, 457, 565
MseI	TTAA	5 cut(s)	191, 222, 261, 300, 537
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	95, 131, 244
NlaIII	CATG	2 cut(s)	63, 174
NlaIV	GGNNCC	1 cut(s)	501
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	17
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	489
Ple19I	CGATCG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	228, 464
RsaNI	GTAC	2 cut(s)	227, 463
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	191, 222, 261, 300, 537
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	3 cut(s)	95, 131, 244
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	2 cut(s)	202, 325
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	4 cut(s)	24, 280, 386, 584
SsiI	CCGC	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	92, 526
TaqI	TCGA	3 cut(s)	94, 98, 187
TasI	AATT	4 cut(s)	24, 280, 386, 584
TatI	WGTACW	1 cut(s)	462
Tru1I	TTAA	5 cut(s)	191, 222, 261, 300, 537
Tru9I	TTAA	5 cut(s)	191, 222, 261, 300, 537
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	379, 398, 466
TspGWI	ACGGA	2 cut(s)	133, 548
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	2 cut(s)	386, 584
XceI	RCATGY	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.