Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

50033831 .. 50036600

Gene Structure 2770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTGGTTTTTATGATGTTGAGCTTGAAGTCCGAGAATATGAGCTTGATCAGTATGGCGTGGTTAACAGTGCTGTCTATTTAGATTATTGCCAGCACGCTTTTAATGAACATTTAGAGAGGGTTGGACTGAGTGCTGATGCGGTTGCCCAAACCGGTGAAGCAATTGCGTTGTCAGCATTGTCTTTGAAATACATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGGCGAGGATGACTAACTCCTCAGCTGCTCGCCTGTACTTTGAGCAGTTTATTTTCAATCTGCCAAATCTAGAGCCTATCTTGGAAGCTTTGGGCACAGTAGTGTGGCTTGATAAAGACTATCGTCCTATCCGTATTCCATCAGAGGTGATATCTAAATTTGTCCAGTTTGGTCACCATAAGGAGTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

5.15

Isoelectric Point (pI)

21.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	11 - 130	2.3e-16	Thioesterase-like superfamily
4HBT	PF03061	19 - 101	3.1e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AciI	CCGC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	29, 190, 289
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	5 cut(s)	25, 46, 257, 320, 423
AluI	AGCT	5 cut(s)	25, 46, 257, 320, 423
Alw26I	GTCTC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	389
AsiGI	ACCGGT	1 cut(s)	155
AsuHPI	GGTGA	3 cut(s)	170, 391, 398
BaeGI	GKGCMC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	379
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	302, 420
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	130
BoxI	GACNNNNGTC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	122, 267
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	244
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	123, 266
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	71, 331
BstC8I	GCNNGC	3 cut(s)	95, 99, 262
BstDEI	CTNAG	2 cut(s)	131, 253
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	404
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	95, 99, 262
Cfr10I	RCCGGY	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	155
CviJI	RGCY	7 cut(s)	25, 46, 257, 307, 320, 340, 423
CviKI_1	RGCY	7 cut(s)	25, 46, 257, 307, 320, 340, 423
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	131, 253
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	384
FaiI	YATR	5 cut(s)	15, 42, 57, 230, 411
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	302, 420
GluI	GCNGC	1 cut(s)	258
HapII	CCGG	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	1 cut(s)	416
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	170, 391, 398
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	35, 376
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	71, 331
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	131, 253
Ksp22I	TGATCA	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	4 cut(s)	107, 169, 278, 410
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	302, 420
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	165, 389
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	114, 213, 231, 262, 370
MseI	TTAA	2 cut(s)	66, 105
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	354
PspEI	GGTNACC	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	66, 105
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	7 cut(s)	27, 48, 205, 259, 322, 381, 425
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	165, 389
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	302, 420
TaaI	ACNGT	2 cut(s)	71, 331
TasI	AATT	2 cut(s)	165, 389
TatI	WGTACW	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	66, 105
Tru9I	TTAA	2 cut(s)	66, 105
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	301
XspI	CTAG	2 cut(s)	302, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.