Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

49602481 .. 49603469

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGCGGTTTTTATGATGTTGAGCTTAAAGTACGACACTATGAGCTTGATCAGTATAGCGTAGTTAACAATGCTGTCTTTGCAAATTATTGCCAGCACGCTCTTAAGGAACTTTTTGAAAGGGTTGGCCTAAAACCAGATGCAGTTGCCCAAACCGGTGAAGCATTTGCGTTGTCAACATCGTCTATGAAATTCATTGCACCTCTAAATGGAGACGAGTTTGTCATAAAGGTCAGGATGACTAATTCCTCAGGCACTCGCCTGTACTTTGAGCACTTCATTTTCAAGCTGCCAAATCTGGAGCCAATCTTGGAAGCAACAGCCACAGTAGTGTGGCTTGATCAGGACTATCGCCCTGTCCGTATTCCATCGGAGGTGATATCTAAATTTGTCCAGTTTCGTCGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

136

Amino Acids

15.69

Weight (kDa)

6.41

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	11 - 129	2.1e-12	Thioesterase-like superfamily
4HBT	PF03061	20 - 99	7.8e-07	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	191, 386
AfaI	GTAC	2 cut(s)	33, 266
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflII	CTTAAG	1 cut(s)	104
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	119, 286
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	3 cut(s)	25, 46, 289
AluI	AGCT	3 cut(s)	25, 46, 289
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	2 cut(s)	191, 386
AsiGI	ACCGGT	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	170, 388
AxyI	CCTNAGG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	376
BclI	TGATCA	2 cut(s)	49, 340
BcoDI	GTCTC	1 cut(s)	207
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	303
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	129
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	49, 340
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	2 cut(s)	49, 340
Bst4CI	ACNGT	1 cut(s)	328
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	95, 99
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	52, 343
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	2 cut(s)	49, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	95, 99
Cfr10I	RCCGGY	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	32, 265
CspAI	ACCGGT	1 cut(s)	155
CviJI	RGCY	7 cut(s)	25, 46, 129, 289, 304, 323, 337
CviKI_1	RGCY	7 cut(s)	25, 46, 129, 289, 304, 323, 337
CviQI	GTAC	2 cut(s)	32, 265
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	2 cut(s)	51, 342
DpnII	GATC	2 cut(s)	49, 340
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	207
FaiI	YATR	5 cut(s)	15, 42, 57, 188, 227
FbaI	TGATCA	2 cut(s)	49, 340
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	67, 177
HindII	GTYRAC	2 cut(s)	67, 177
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	170, 388
Hpy166II	GTNNAC	2 cut(s)	67, 177
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	3 cut(s)	235, 299, 344
Hpy8I	GTNNAC	2 cut(s)	67, 177
Hpy99I	CGWCG	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	83, 143, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	250
Ksp22I	TGATCA	2 cut(s)	49, 340
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	49, 340
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	130
MalI	GATC	2 cut(s)	51, 342
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	49, 340
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	85, 191, 244, 386
MnlI	CCTC	3 cut(s)	213, 259, 367
MseI	TTAA	3 cut(s)	27, 66, 105
MslI	CAYNNNNRTG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	49, 340
NlaIV	GGNNCC	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	303
RsaI	GTAC	2 cut(s)	33, 266
RsaNI	GTAC	2 cut(s)	32, 265
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	27, 66, 105
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	2 cut(s)	49, 340
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	6 cut(s)	27, 48, 205, 234, 291, 378
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	85, 191, 244, 386
SsiI	CCGC	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	328
TasI	AATT	4 cut(s)	85, 191, 244, 386
TatI	WGTACW	1 cut(s)	264
Tru1I	TTAA	3 cut(s)	27, 66, 105
Tru9I	TTAA	3 cut(s)	27, 66, 105
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	184, 203, 268
TspGWI	ACGGA	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	104
XapI	RAATTY	2 cut(s)	191, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.